RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 KHKP50053 298 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 EMP3P54852 163 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 PCBP3P57721 371 aaKnown RBP15.83■□□□□ 0.13
CLN3-252ENST00000636907 MYBPC3Q14896 1274 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 MAPK11Q15759 364 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 SYT16Q17RD7 645 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 CMPK2Q5EBM0 449 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 TCEAL6Q6IPX3 200 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 SLC30A8Q8IWU4 369 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 OR7G2Q8NG99 324 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 SLC38A5Q8WUX1 472 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 NAT6Q93015 286 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 TCEAL3Q969E4 200 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 ANKRD9Q96BM1 317 aaPredicted RBP15.83■□□□□ 0.13
CLN3-252ENST00000636907 TAMM41Q96BW9 452 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 MMABQ96EY8 250 aaPredicted RBP15.83■□□□□ 0.13
CLN3-252ENST00000636907 PEX11GQ96HA9 241 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 VPS50Q96JG6 964 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 YIPF4Q9BSR8 244 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 BDH2Q9BUT1 245 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 NTN4Q9HB63 628 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 TRPC4Q9UBN4 977 aa15.83■□□□□ 0.13
CLN3-252ENST00000636907 TMEM184BQ9Y519 407 aaPredicted RBP15.83■□□□□ 0.13
CLN3-252ENST00000636907 UNC13CQ8NB66 2214 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 ADAMTS20P59510 1910 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 SCN2AQ99250 2005 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 PRAMEF27A3QJZ7 478 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 M0QX08 132 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 CPNE6O95741 557 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 SPTBP11277 2137 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 HOXB6P17509 224 aaKnown RBP15.83■□□□□ 0.12
CLN3-252ENST00000636907 MAGEA2P43356 314 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 NRF1Q16656 503 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 PROX2Q3B8N5 592 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 CRB2Q5IJ48 1285 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 RPS26P11Q5JNZ5 115 aaPredicted RBP15.83■□□□□ 0.12
CLN3-252ENST00000636907 REEP3Q6NUK4 255 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 FAM111BQ6SJ93 734 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 ZBTB49Q6ZSB9 765 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 SLC44A2Q8IWA5 706 aaPredicted RBP15.83■□□□□ 0.12
CLN3-252ENST00000636907 GIMAP5Q96F15 307 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 OTUB1Q96FW1 271 aaPredicted RBP15.83■□□□□ 0.12
CLN3-252ENST00000636907 C16orf58Q96GQ5 468 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 TMEM19Q96HH6 336 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 TPD52L3Q96J77 140 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 LRRN3Q9H3W5 708 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 CUTCQ9NTM9 273 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 ADPRHL2Q9NX46 363 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 OAZ3Q9UMX2 235 aa15.83■□□□□ 0.12
CLN3-252ENST00000636907 DMDP11532 3685 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 KMT2EQ8IZD2 1858 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 MYO15AQ9UKN7 3530 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 C5orf58C9J3I9 102 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 PDLIM1O00151 329 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 UPK1AO00322 258 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 PLOD2O00469 737 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 SOCS2O14508 198 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 ACOX3O15254 700 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 TOX3O15405 576 aaPredicted RBP15.82■□□□□ 0.12
CLN3-252ENST00000636907 SUV39H1O43463 412 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 PRSS23O95084 383 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 CST1P01037 141 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 ATP1B1P05026 303 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 CKMT1AP12532 417 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 SOX18P35713 384 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 MAGEA8P43361 318 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.82■□□□□ 0.12
CLN3-252ENST00000636907 ZNF628Q5EBL2 1059 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 PRAMEF17Q5VTA0 474 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 PPP4R4Q6NUP7 873 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 ZDHHC21Q8IVQ6 265 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 IFI44Q8TCB0 444 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 MIPOL1Q8TD10 442 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 XAGE5Q8WWM1 108 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 VCXQ9H320 206 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 CLK4Q9HAZ1 481 aaKnown RBP15.82■□□□□ 0.12
CLN3-252ENST00000636907 IL1RAPQ9NPH3 570 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 EQTNQ9NQ60 294 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 THUMPD1Q9NXG2 353 aaKnown RBP15.82■□□□□ 0.12
CLN3-252ENST00000636907 NTMQ9P121 344 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 DNAJB9Q9UBS3 223 aa15.82■□□□□ 0.12
CLN3-252ENST00000636907 H0YIG0 161 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 ZNF749O43361 778 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 NME6O75414 186 aaPredicted RBP15.81■□□□□ 0.12
CLN3-252ENST00000636907 MSL3P1P0C860 447 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 GCGRP47871 477 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 ITGA1P56199 1179 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 SELENOWP63302 87 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 KCNJ10P78508 379 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 DAB2P98082 770 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 ELOAQ14241 798 aaKnown RBP15.81■□□□□ 0.12
CLN3-252ENST00000636907 ERV3-1Q14264 604 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 SYPL1Q16563 259 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 FAM214AQ32MH5 1076 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 ZC3H14Q6PJT7 736 aaKnown RBP15.81■□□□□ 0.12
CLN3-252ENST00000636907 TTLL10Q6ZVT0 673 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 FKBP9P1Q75LS8 142 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 PATL1Q86TB9 770 aaKnown RBP15.81■□□□□ 0.12
CLN3-252ENST00000636907 CBR4Q8N4T8 237 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms