RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZNF669Q96BR6 464 aaPredicted RBP13.15□□□□□ -0.3
CLN3-249ENST00000636685 PLPPR2Q96GM1 343 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 KRT12Q99456 494 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 TMEM204Q9BSN7 226 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 ERVK-6Q9BXR3 956 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 PRDM7Q9NQW5 492 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.15□□□□□ -0.3
CLN3-249ENST00000636685 HEY2Q9UBP5 337 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 ERVK-19Q9WJR5 959 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 MAD1L1Q9Y6D9 718 aa13.15□□□□□ -0.3
CLN3-249ENST00000636685 IQANK1A0A1B0GTG1 560 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 CRHP06850 196 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 TBXA2RP21731 343 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 KIR2DL2P43627 348 aaPredicted RBP13.14□□□□□ -0.31
CLN3-249ENST00000636685 IGLV3-21P80748 117 aaPredicted RBP13.14□□□□□ -0.31
CLN3-249ENST00000636685 SLBPQ14493 270 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLN3-249ENST00000636685 ADNP2Q6IQ32 1131 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 BHLHB9Q6PI77 547 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 SCIMPQ6UWF3 145 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 TMIGD1Q6UXZ0 262 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 ZNF793Q6ZN11 406 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 RNF111Q6ZNA4 994 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 VN1R5Q7Z5H4 357 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 VSTM4Q8IW00 320 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 UBL4BQ8N7F7 174 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 ZNF610Q8N9Z0 462 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 OR1J4Q8NGS1 313 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 OR14L1PQ8NHC6 308 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 RDH11Q8TC12 318 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 TRIM54Q9BYV2 358 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 LYRM4Q9HD34 91 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 SERHLQ9NQF3 203 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 WWOXQ9NZC7 414 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 KCNE2Q9Y6J6 123 aa13.14□□□□□ -0.31
CLN3-249ENST00000636685 IGHV4-30-2A0A087WSY4 118 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 A0A096LNT2 108 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 C2orf72A6NCS6 295 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 CAPN14A8MX76 684 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 CDC7O00311 574 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 HCRTR2O43614 444 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 DYRK3O43781 588 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 H2AFYO75367 372 aaKnown RBP13.13□□□□□ -0.31
CLN3-249ENST00000636685 CLEC3AO75596 197 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 CGAP01215 116 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 CLPSP04118 112 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 C1GALT1C1LP0DN25 315 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 SRD5A1P18405 259 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 CFPP27918 469 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 SLC6A12P48065 614 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 LHX2P50458 406 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 PGGT1BP53609 377 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 TERF1P54274 439 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 CASP9P55211 416 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 SLC37A1P57057 533 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 FUT7Q11130 342 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 ZNF267Q14586 743 aaPredicted RBP13.13□□□□□ -0.31
CLN3-249ENST00000636685 SPA17Q15506 151 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 UBAP2Q5T6F2 1119 aaKnown RBP13.13□□□□□ -0.31
CLN3-249ENST00000636685 SLCO4C1Q6ZQN7 724 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 IL17RELQ6ZVW7 336 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 PEX26Q7Z412 305 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 MILR1Q7Z6M3 343 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 TTLQ8NG68 377 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 RBM18Q96H35 190 aaKnown RBP13.13□□□□□ -0.31
CLN3-249ENST00000636685 ZNF845Q96IR2 970 aaPredicted RBP13.13□□□□□ -0.31
CLN3-249ENST00000636685 F2RL3Q96RI0 385 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 TSGA10Q9BZW7 698 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 GDF2Q9UK05 429 aaPredicted RBP13.13□□□□□ -0.31
CLN3-249ENST00000636685 FBXO5Q9UKT4 447 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 IKZF3Q9UKT9 509 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 LIPT1Q9Y234 373 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 MAGED1Q9Y5V3 778 aaPredicted RBP13.13□□□□□ -0.31
CLN3-249ENST00000636685 CADP27708 2225 aa13.13□□□□□ -0.31
CLN3-249ENST00000636685 THBS1P07996 1170 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 DANCRP0C864 163 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 GMPRP36959 345 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 CDKN2DP55273 166 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 GFRA1P56159 465 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 CLDN18P56856 261 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 PCDH1Q08174 1060 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 SETDB1Q15047 1291 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 EXOC3L2Q2M3D2 409 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 RBM20Q5T481 1227 aaKnown RBP13.12□□□□□ -0.31
CLN3-249ENST00000636685 OR2A2Q6IF42 318 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.12□□□□□ -0.31
CLN3-249ENST00000636685 UBE3DQ7Z6J8 389 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 WFDC8Q8IUA0 241 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 PRR22Q8IZ63 422 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 LILRB1Q8NHL6 650 aaPredicted RBP13.12□□□□□ -0.31
CLN3-249ENST00000636685 RAB3IL1Q8TBN0 382 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 TNFRSF13CQ96RJ3 184 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 FRMD8P1Q9BZ68 369 aaPredicted RBP13.12□□□□□ -0.31
CLN3-249ENST00000636685 OR2B2Q9GZK3 357 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 GRPEL1Q9HAV7 217 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 TAS2R13Q9NYV9 303 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 RNF112Q9ULX5 631 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 DLGAP4Q9Y2H0 992 aa13.12□□□□□ -0.31
CLN3-249ENST00000636685 ZCWPW2A0A1B0GU75 182 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 C2orf92A0A1B0GVN3 265 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 ANKDD1BA6NHY2 528 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms