RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 IL1AP01583 271 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 STAT5AP42229 794 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 MLLT3P42568 568 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 FNTBP49356 437 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 RHAGQ02094 409 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 GPR17Q13304 367 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 RNF180Q86T96 592 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 CALHM3Q86XJ0 350 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 RBM45Q8IUH3 476 aaKnown RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 FAM20CQ8IXL6 584 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 NLGN4YQ8NFZ3 816 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 TNFAIP8L1Q8WVP5 186 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 COQ10AQ96MF6 247 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 MRPL9Q9BYD2 267 aaKnown RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 SLC28A3Q9HAS3 691 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 BTNL2Q9UIR0 455 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 SIPA1L1O43166 1804 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 FAAHO00519 579 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 HRGP04196 525 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 SNTB2Q13425 540 aaKnown RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 GALEQ14376 348 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 P2RY14Q15391 338 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 SLC36A4Q6YBV0 504 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 C6orf120Q7Z4R8 191 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 ZNF655Q8N720 491 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 WDR48Q8TAF3 677 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.5□□□□□ -0.73
CLN3-244ENST00000636147 ASB12Q8WXK4 309 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 PLD4Q96BZ4 506 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 PITX2Q99697 317 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 ARHGAP39Q9C0H5 1083 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 GABARAPL1Q9H0R8 117 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 OR2AG1Q9H205 316 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 HHATLQ9HCP6 504 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 KRCC1Q9NPI7 259 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 PLCXD1Q9NUJ7 323 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 ZNF69Q9UC07 566 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 POLHQ9Y253 713 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 PHIPQ8WWQ0 1821 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 CIB4A0PJX0 185 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 FAM183AA6NL82 134 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 SCAMP1O15126 338 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 DUSP11O75319 330 aaKnown RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 SRCP12931 536 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 GIFP27352 417 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 MAGEA2P43356 314 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 CHRNEQ04844 493 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 MLLT11Q13015 90 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 WASH2PQ6VEQ5 465 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 IKBIPQ70UQ0 350 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 IQCF2Q8IXL9 164 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 ZBED6CLQ96FA7 236 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 OR4K3Q96R72 315 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 THAP7Q9BT49 309 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 EVA1BQ9NVM1 165 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 CXXC1Q9P0U4 656 aaPredicted RBP10.5□□□□□ -0.73
CLN3-244ENST00000636147 CSNK1G3Q9Y6M4 447 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 PITPNM1O00562 1244 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 KLKB1P03952 638 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 IFNA16P05015 189 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 PCSK2P16519 638 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 KELP23276 732 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 ETV3P41162 512 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 CSNK1DP48730 415 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 CRTC1Q6UUV9 634 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 MSANTD1Q6ZTZ1 278 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 HMGB4Q8WW32 186 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 TM9SF4Q92544 642 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 EFCAB11Q9BUY7 163 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 ACER3Q9NUN7 267 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 HCSTQ9UBK5 93 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 KCNN3Q9UGI6 736 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 PADI2Q9Y2J8 665 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.49□□□□□ -0.73
CLN3-244ENST00000636147 HYKKA2RU49 373 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 SLC9A3R1O14745 358 aaPredicted RBP10.49□□□□□ -0.73
CLN3-244ENST00000636147 ZNF623O75123 536 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 REM1O75628 298 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 KLHL18O94889 574 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 IDSP22304 550 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 GPR4P46093 362 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 GIPRP48546 466 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 NCBP2P52298 156 aaKnown RBP eCLIP10.49□□□□□ -0.73
CLN3-244ENST00000636147 KIAA0040Q15053 153 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 SF3A2Q15428 464 aaKnown RBP10.49□□□□□ -0.73
CLN3-244ENST00000636147 SSX1Q16384 188 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 RTP2Q5QGT7 225 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 MTSS1LQ765P7 747 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 CEACAM19Q7Z692 300 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 SYNPOQ8N3V7 929 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 TMEM145Q8NBT3 493 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 DBF4BQ8NFT6 615 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 RPLP0P6Q8NHW5 317 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 RAET1EQ8TD07 263 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 ADAMTS15Q8TE58 950 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 NEIL2Q969S2 332 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 PRR14Q9BWN1 585 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 P2RY12Q9H244 342 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 P2RX2Q9UBL9 471 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 GNB5O14775 395 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms