RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 LRRC25Q8N386 305 aaPredicted RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 NUBPLQ8TB37 319 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-240ENST00000631023 MIB2Q96AX9 1013 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 EXOSC8Q96B26 276 aaKnown RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 TRIM45Q9H8W5 580 aaPredicted RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 ENTPD4Q9Y227 616 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 TMEM200CA6NKL6 621 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 HRKO00198 91 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 OR2J2O76002 312 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 ST13P50502 369 aaKnown RBP19.22■□□□□ 0.67
CLN3-240ENST00000631023 HK2P52789 917 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 RPL38P63173 70 aaKnown RBP19.22■□□□□ 0.67
CLN3-240ENST00000631023 IGFBP7Q16270 282 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 ATP6AP1LQ52LC2 224 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 PRR30Q53SZ7 412 aaPredicted RBP19.22■□□□□ 0.67
CLN3-240ENST00000631023 CES4AQ5XG92 561 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 FAM71E1Q6IPT2 247 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 TRIM42Q8IWZ5 723 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 GPALPP1Q8IXQ4 340 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 TMEM178AQ8NBL3 297 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 MDS2Q8NDY4 140 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 DOK4Q8TEW6 326 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 TMEM125Q96AQ2 219 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 ARL8AQ96BM9 186 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 CNRIP1Q96F85 164 aaPredicted RBP19.22■□□□□ 0.67
CLN3-240ENST00000631023 ATP6V1G3Q96LB4 118 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 ZNF681Q96N22 645 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 SIGLEC12Q96PQ1 595 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 SLC35C2Q9NQQ7 365 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 ASF1BQ9NVP2 202 aa19.22■□□□□ 0.67
CLN3-240ENST00000631023 GCN1Q92616 2671 aaKnown RBP19.22■□□□□ 0.67
CLN3-240ENST00000631023 WWP2O00308 870 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 VPS4BO75351 444 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 SKAP2O75563 359 aaPredicted RBP19.21■□□□□ 0.67
CLN3-240ENST00000631023 MAPK1P28482 360 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 MPIP34949 423 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 RPL14P50914 215 aaKnown RBP19.21■□□□□ 0.67
CLN3-240ENST00000631023 SLC37A1P57057 533 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 FUT7Q11130 342 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 MAP4K2Q12851 820 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 MPEG1Q2M385 716 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 RFTN2Q52LD8 501 aaPredicted RBP19.21■□□□□ 0.67
CLN3-240ENST00000631023 XKR7Q5GH72 579 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 ZNF468Q5VIY5 522 aaPredicted RBP19.21■□□□□ 0.67
CLN3-240ENST00000631023 FAM180AQ6UWF9 173 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 VWA5B2Q8N398 1253 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 ZNF781Q8N8C0 355 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 OR7G1Q8NGA0 311 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 ASB15Q8WXK1 588 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 FCRL1Q96LA6 429 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 BRINP2Q9C0B6 783 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 ZNF395Q9H8N7 513 aaPredicted RBP19.21■□□□□ 0.67
CLN3-240ENST00000631023 LIN28AQ9H9Z2 209 aaKnown RBP19.21■□□□□ 0.67
CLN3-240ENST00000631023 RYDENQ9NUL5 291 aaKnown RBP19.21■□□□□ 0.67
CLN3-240ENST00000631023 VPS4AQ9UN37 437 aa19.21■□□□□ 0.67
CLN3-240ENST00000631023 NEURL1O76050 574 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 RASAL1O95294 804 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 WISP1O95388 367 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 PRICKLE4Q2TBC4 344 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 ATG16L1Q676U5 607 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 SLC25A25Q6KCM7 469 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 C9orf40Q8IXQ3 194 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 CCDC116Q8IYX3 515 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 CYP4Z2PQ8N1L4 340 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 RAB3IL1Q8TBN0 382 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 C19orf60Q96EN9 201 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 BBS4Q96RK4 519 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 RASL10BQ96S79 203 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 KLHL1Q9NR64 748 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 TAS2R7Q9NYW3 318 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 ERVK-11Q9UQG0 969 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 NUP214P35658 2090 aaPredicted RBP19.2■□□□□ 0.66
CLN3-240ENST00000631023 NINQ8N4C6 2090 aa19.2■□□□□ 0.66
CLN3-240ENST00000631023 ATP6AP2A0A1C7CYW4 349 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 A8MVJ9 347 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 PEX11AO75192 247 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 SLC25A12O75746 678 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 ATP6AP2O75787 350 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 SP1P08047 785 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 CT62P0C5K7 136 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 SSTR4P31391 388 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 ASMTP46597 345 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 BST1Q10588 318 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 MAPKAPK3Q16644 382 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 FAM180BQ6P0A1 224 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 C16orf47Q6ZP98 133 aaPredicted RBP19.19■□□□□ 0.66
CLN3-240ENST00000631023 TICAM1Q8IUC6 712 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 SLC15A4Q8N697 577 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 BCORP1Q8N888 145 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 FAM98AQ8NCA5 519 aaKnown RBP19.19■□□□□ 0.66
CLN3-240ENST00000631023 GALNT11Q8NCW6 608 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 GRHL3Q8TE85 626 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 TUBGCP3Q96CW5 907 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 SCMH1Q96GD3 660 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 GAL3ST4Q96RP7 486 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 SORT1Q99523 831 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 C20orf27Q9GZN8 174 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 OR10A5Q9H207 317 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 HPF1Q9NWY4 346 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms