RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DEFB109BQ30KR1 87 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 CCDC116Q8IYX3 515 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 NATD1Q8N6N6 113 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 GLB1L3Q8NCI6 653 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-211ENST00000618700 OR8J2Q8NGG1 315 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 OR9I1Q8NGQ6 314 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF675Q8TD23 568 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 AMDHD1Q96NU7 426 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 BBS4Q96RK4 519 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 BHLHE41Q9C0J9 482 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-211ENST00000618700 GLIPR2Q9H4G4 154 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 CXorf21Q9HAI6 301 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 ACSS1Q9NUB1 689 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-211ENST00000618700 CLCA3PQ9Y6N3 262 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 MGAQ8IWI9 3026 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 CROCCQ5TZA2 2017 aa18.39■□□□□ 0.53
UPF3A-211ENST00000618700 ARGFXA6NJG6 315 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 C9JVG2 144 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 NCF2P19878 526 aaPredicted RBP18.38■□□□□ 0.53
UPF3A-211ENST00000618700 MPIP34949 423 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 GPR143P51810 404 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 WNT3P56703 355 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 SRSF11Q05519 484 aaKnown RBP18.38■□□□□ 0.53
UPF3A-211ENST00000618700 MGAT2Q10469 447 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 PRICKLE4Q2TBC4 344 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 SPANXN4Q5MJ08 99 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 PAOXQ6QHF9 649 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 PIGWQ7Z7B1 504 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 GALNT12Q8IXK2 581 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 CPSF7Q8N684 471 aaKnown RBP18.38■□□□□ 0.53
UPF3A-211ENST00000618700 AMER2Q8N7J2 671 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 APCDD1LQ8NCL9 501 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 MORN4Q8NDC4 146 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 B3GNT7Q8NFL0 401 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 M1APQ8TC57 530 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 SLC2A12Q8TD20 617 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 RIT1Q92963 219 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 FBXL20Q96IG2 436 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 ZBTB18Q99592 522 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 DUSP26Q9BV47 211 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 RABEP2Q9H5N1 569 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 TMEM45AQ9NWC5 275 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 MAT2BQ9NZL9 334 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 KCNMB2Q9Y691 235 aa18.38■□□□□ 0.53
UPF3A-211ENST00000618700 FAM107AO95990 144 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 IGKV3-11P04433 115 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 CT62P0C5K7 136 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 TNNI3P19429 210 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 NT5EP21589 574 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 PTGER1P34995 402 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 KIR3DL1P43629 444 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 PGDP52209 483 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 NCBP2P52298 156 aaKnown RBP eCLIP18.37■□□□□ 0.534e-7■■■■□ 22.1
UPF3A-211ENST00000618700 PHC1P78364 1004 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 MAP4K2Q12851 820 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 AIMP2Q13155 320 aaKnown RBP18.37■□□□□ 0.53
UPF3A-211ENST00000618700 MLC1Q15049 377 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 PGS1Q32NB8 556 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 FAM174BQ3ZCQ3 159 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF628Q5EBL2 1059 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 APLFQ8IW19 511 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-211ENST00000618700 CLEC1AQ8NC01 280 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 OR9A2Q8NGT5 310 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF721Q8TF20 911 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 CTHRC1Q96CG8 243 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 ZBED6CLQ96FA7 236 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-211ENST00000618700 CRELD1Q96HD1 420 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 SENP5Q96HI0 755 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-211ENST00000618700 CCT8L2Q96SF2 557 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 SEMA4CQ9C0C4 833 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 ING2Q9H160 280 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 PRORYQ9H606 182 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 MMP25Q9NPA2 562 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF639Q9UID6 485 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 ITPR1Q14643 2758 aa18.37■□□□□ 0.53
UPF3A-211ENST00000618700 HRKO00198 91 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 RNASET2O00584 256 aaKnown RBP18.36■□□□□ 0.53
UPF3A-211ENST00000618700 DYRK3O43781 588 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 SCN2BO60939 215 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 SLITRK5O94991 958 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 SERPINA7P05543 415 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 CELA2AP08217 269 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 IFI6P09912 130 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ICAM2P13598 275 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 S1PR1P21453 382 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 SOX8P57073 446 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 FUT7Q11130 342 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 CHAF1BQ13112 559 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 RCAN2Q14206 197 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 BTBD16Q32M84 506 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 OR4F3Q6IEY1 312 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF551Q7Z340 670 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-211ENST00000618700 FUNDC1Q8IVP5 155 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 VWA5B2Q8N398 1253 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ANKK1Q8NFD2 765 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ADCY4Q8NFM4 1077 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ZFP28Q8NHY6 868 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ELP5Q8TE02 316 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 DOK4Q8TEW6 326 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 NCLNQ969V3 563 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms