RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 MS4A12Q9NXJ0 267 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 COPS7AQ9UBW8 275 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 RNF11Q9Y3C5 154 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 LIPGQ9Y5X9 500 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 A0A1B0GVC2 190 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 BCKDKO14874 412 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 SEMA3DO95025 777 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 ETHE1O95571 254 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 ACVR2AP27037 513 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 RPS13P62277 151 aaKnown RBP17.5■□□□□ 0.39
CDX1-202ENST00000616154 PHEXP78562 749 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 CPSF6Q16630 551 aaKnown RBP eCLIP17.5■□□□□ 0.39
CDX1-202ENST00000616154 MPEG1Q2M385 716 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 HYAL4Q2M3T9 481 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 TRILQ7L0X0 811 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 DMRTC2Q8IXT2 367 aaPredicted RBP17.5■□□□□ 0.39
CDX1-202ENST00000616154 RNF175Q8N4F7 328 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 TMEM251Q8N6I4 163 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 ZNF721Q8TF20 911 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 ZNF483Q8TF39 744 aaPredicted RBP17.5■□□□□ 0.39
CDX1-202ENST00000616154 ANKRD9Q96BM1 317 aaPredicted RBP17.5■□□□□ 0.39
CDX1-202ENST00000616154 ATP6V1G3Q96LB4 118 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 DDX31Q9H8H2 851 aaKnown RBP17.5■□□□□ 0.39
CDX1-202ENST00000616154 SSU72Q9NP77 194 aaKnown RBP17.5■□□□□ 0.39
CDX1-202ENST00000616154 ZFHX3Q15911 3703 aa17.5■□□□□ 0.39
CDX1-202ENST00000616154 A0A0A6YYD5 115 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 FIGNL2A6NMB9 653 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 A8MT66 165 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 AQP7O14520 342 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 PYGBP11216 843 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 COX7A2P14406 83 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 CPN2P22792 545 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 BSGP35613 385 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 MAGEA5P43359 124 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 STT3AP46977 705 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 ID2Q02363 134 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 FOXO1Q12778 655 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 DDX39BQ13838 428 aaKnown RBP17.49■□□□□ 0.39
CDX1-202ENST00000616154 TTMPQ5BVD1 217 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 FAM47EQ6ZV65 393 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 MYLK4Q86YV6 388 aaPredicted RBP17.49■□□□□ 0.39
CDX1-202ENST00000616154 OR5M9Q8NGP3 310 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 NUBPLQ8TB37 319 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 NSUN5Q96P11 429 aaKnown RBP17.49■□□□□ 0.39
CDX1-202ENST00000616154 TNFRSF10DQ9UBN6 386 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 PHF11Q9UIL8 331 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 ARHGAP21Q5T5U3 1957 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 NCKAP5O14513 1909 aa17.49■□□□□ 0.39
CDX1-202ENST00000616154 SAP18O00422 153 aaKnown RBP17.48■□□□□ 0.39
CDX1-202ENST00000616154 FGF17O60258 216 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 P04436 131 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 HOXD4P09016 255 aaPredicted RBP17.48■□□□□ 0.39
CDX1-202ENST00000616154 CCL3P10147 92 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 KRT4P19013 534 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 DNASE1L1P49184 302 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 CCNG1P51959 295 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 RAP1GDS1P52306 607 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 TNFRSF17Q02223 184 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 BIKQ13323 160 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 PIGGQ5H8A4 983 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 FRG2Q64ET8 278 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 ZNF585AQ6P3V2 769 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 BANPQ8N9N5 519 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 FRG2BQ96QU4 278 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 TTYH2Q9BSA4 534 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 SORBS1Q9BX66 1292 aaKnown RBP17.48■□□□□ 0.39
CDX1-202ENST00000616154 MED4Q9NPJ6 270 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 TUBA8Q9NY65 449 aaPredicted RBP17.48■□□□□ 0.39
CDX1-202ENST00000616154 KCNN3Q9UGI6 736 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 ATG4BQ9Y4P1 393 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 ASB4Q9Y574 426 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 FAM215AQ9Y5M1 114 aa17.48■□□□□ 0.39
CDX1-202ENST00000616154 HMGB1P1B2RPK0 211 aaPredicted RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 TYROBPO43914 113 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SUSD5O60279 629 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 IGKV3-11P04433 115 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 GSTA1P08263 222 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 GLI4P10075 376 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 CREB1P16220 341 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 CRHR1P34998 444 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 HERVK_113P63132 956 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SLAMF1Q13291 335 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 B3GNT6Q6ZMB0 384 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 GPR180Q86V85 440 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 TANKQ92844 425 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 ZBTB9Q96C00 473 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SENP5Q96HI0 755 aaPredicted RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 DGAT2Q96PD7 388 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 CDK15Q96Q40 435 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SERPINI1Q99574 410 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 ERVK-6Q9BXR3 956 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 CENPHQ9H3R5 247 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 PRM3Q9NNZ6 103 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SH2D2AQ9NP31 389 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 LYARQ9NX58 379 aaKnown RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 TMEM216Q9P0N5 145 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 NINQ8N4C6 2090 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 A0A1B0GTL3 188 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 PROM1O43490 865 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 TMPRSS11DO60235 418 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms