RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 DUSP2Q05923 314 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 KIAA0040Q15053 153 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 TLR1Q15399 786 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 OR1C1Q15619 314 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 IGFBP7Q16270 282 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 ATP6AP1LQ52LC2 224 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 ZNF468Q5VIY5 522 aaPredicted RBP10.3□□□□□ -0.76
LIG1-211ENST00000596457 ATG16L1Q676U5 607 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 SPINK14Q6IE38 97 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 FAM71E1Q6IPT2 247 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 GALNT18Q6P9A2 607 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 FAM111BQ6SJ93 734 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 SLC29A4Q7RTT9 530 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 TICAM1Q8IUC6 712 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 TRIM42Q8IWZ5 723 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 HOMEZQ8IX15 550 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 GALNT12Q8IXK2 581 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 LRRC25Q8N386 305 aaPredicted RBP10.3□□□□□ -0.76
LIG1-211ENST00000596457 TMEM156Q8N614 296 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 Q8NA96 180 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 FAM76AQ8TAV0 307 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 CPT1CQ8TCG5 803 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 DYDC1Q8WWB3 177 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 C19orf60Q96EN9 201 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 CNRIP1Q96F85 164 aaPredicted RBP10.3□□□□□ -0.76
LIG1-211ENST00000596457 PPP3R2Q96LZ3 170 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 SIGLEC12Q96PQ1 595 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 BBS4Q96RK4 519 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 GAL3ST4Q96RP7 486 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 SORT1Q99523 831 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 ACBD3Q9H3P7 528 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 MIEF1Q9NQG6 463 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 KLHL1Q9NR64 748 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 SIRT5Q9NXA8 310 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 BCAP29Q9UHQ4 241 aa10.3□□□□□ -0.76
LIG1-211ENST00000596457 PPIEQ9UNP9 301 aaKnown RBP10.3□□□□□ -0.76
LIG1-211ENST00000596457 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.3□□□□□ -0.76
LIG1-211ENST00000596457 ITPR3Q14573 2671 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 TRAV17A0A0B4J275 112 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 ENO4A6NNW6 628 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 PRAMEF2O60811 474 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 SORBS2O94875 1100 aaKnown RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 JUNP05412 331 aaKnown RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 SDC1P18827 310 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 DDCP20711 480 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 PRPH2P23942 346 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 MAPK1P28482 360 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 GSTM5P46439 218 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 TNFSF10P50591 281 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 HK2P52789 917 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 SLC18A1P54219 525 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 FOXK1P85037 733 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 EXOSC7Q15024 291 aaKnown RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 LTB4RQ15722 352 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 INPP5JQ15735 1006 aaPredicted RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 PRSS53Q2L4Q9 553 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 SPRED3Q2MJR0 410 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 ZNF766Q5HY98 468 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 HLA-DQA1Q5Y7H0 255 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 ANKRD26P1Q6NSI1 321 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 IL20RBQ6UXL0 311 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 RNF165Q6ZSG1 346 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 C9orf40Q8IXQ3 194 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 LIX1Q8N485 282 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 FNDC5Q8NAU1 212 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 OR5L2Q8NGL0 311 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 ASB15Q8WXK1 588 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 KAT2AQ92830 837 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 C11orf24Q96F05 449 aaPredicted RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 FBXL20Q96IG2 436 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 SH3GL2Q99962 352 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 HES7Q9BYE0 225 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 NUF2Q9BZD4 464 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 OR10A5Q9H207 317 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 CXorf21Q9HAI6 301 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 MYNNQ9NPC7 610 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 SLC35C2Q9NQQ7 365 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIG1-211ENST00000596457 SH3BP4Q9P0V3 963 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 LRFN1Q9P244 771 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 MARCOQ9UEW3 520 aaPredicted RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 ERVK-11Q9UQG0 969 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 YARS2Q9Y2Z4 477 aaKnown RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 COPG1Q9Y678 874 aaKnown RBP10.29□□□□□ -0.76
LIG1-211ENST00000596457 CREBBPQ92793 2442 aa10.29□□□□□ -0.76
LIG1-211ENST00000596457 TMEM200CA6NKL6 621 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 HMGB1P1B2RPK0 211 aaPredicted RBP10.28□□□□□ -0.76
LIG1-211ENST00000596457 BCKDHAP12694 445 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 CD46P15529 392 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 PCSK2P16519 638 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 GALNSP34059 522 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 SOX3P41225 446 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 CYB561P49447 251 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 NCBP2P52298 156 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIG1-211ENST00000596457 PPP2R2AP63151 447 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 MRPS35P82673 323 aaKnown RBP10.28□□□□□ -0.76
LIG1-211ENST00000596457 MAPKAPK3Q16644 382 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 PRICKLE4Q2TBC4 344 aa10.28□□□□□ -0.76
LIG1-211ENST00000596457 TRMT12Q53H54 448 aaKnown RBP10.28□□□□□ -0.76
LIG1-211ENST00000596457 XKR7Q5GH72 579 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms