RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PCSK1P29120 753 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ADORA2BP29275 332 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ALDH4A1P30038 563 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 IFNA8P32881 189 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SOX6P35712 828 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 KRT20P35900 424 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SPAM1P38567 509 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 HNF4AP41235 474 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PNPLA4P41247 253 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PIK3CBP42338 1070 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SLC15A1P46059 708 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PGFP49763 221 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 NKX2-5P52952 324 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 PLK1P53350 603 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 UGT2B15P54855 530 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 OLR1P78380 273 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 GALK2Q01415 458 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ACVR1Q04771 509 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ELP6Q0PNE2 266 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ADIGQ0VDE8 80 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CNTN1Q12860 1018 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 EIF2B5Q13144 721 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 CTBP1Q13363 440 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 GRB7Q14451 532 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SEMA3AQ14563 771 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ZNF235Q14590 738 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 MAD2L1BPQ15013 274 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 TRIP4Q15650 581 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 NPTX1Q15818 432 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 HNRNPA1L2Q32P51 320 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 KRTAP24-1Q3LI83 254 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CCDC58Q4VC31 144 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ATP6AP1LQ52LC2 224 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 YIF1BQ5BJH7 314 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PAGE3Q5JUK9 113 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SPANXN2Q5MJ10 180 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 FAM182AQ5T1J6 154 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ARTNQ5T4W7 220 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 C9orf64Q5T6V5 341 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PIK3R6Q5UE93 754 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 AGBL4Q5VU57 503 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 MLIPQ5VWP3 458 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 LYPLAL1Q5VWZ2 237 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 C8orf86Q6ZUL3 223 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 DET1Q7L5Y6 550 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ZNF367Q7RTV3 350 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SLC46A3Q7Z3Q1 461 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SNX20Q7Z614 316 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CCDC190Q86UF4 302 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SLC51BQ86UW2 128 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 IFNEQ86WN2 208 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 KRT73Q86Y46 540 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 RAB43Q86YS6 212 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PLCZ1Q86YW0 608 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CILP2Q8IUL8 1156 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 LIX1LQ8IVB5 337 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TCTE3Q8IZS6 198 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CIARTQ8N365 385 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 CARNMT1Q8N4J0 409 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PARP16Q8N5Y8 322 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 C12orf29Q8N999 325 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 FAM83FQ8NEG4 500 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 OR2T12Q8NG77 320 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CNIH3Q8TBE1 160 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 DNAJB14Q8TBM8 379 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ZFAND1Q8TCF1 268 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 GRHL3Q8TE85 626 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 BTN2A2Q8WVV5 523 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 OVCA2Q8WZ82 227 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 FIG4Q92562 907 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 RPL3LQ92901 407 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 FAM162AQ96A26 154 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 FAM149B1Q96BN6 582 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 LGALS12Q96DT0 336 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CLIP3Q96DZ5 547 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PCED1BQ96HM7 432 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ST6GAL2Q96JF0 529 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TNIP3Q96KP6 325 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 EGLN2Q96KS0 407 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 BMFQ96LC9 184 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 WDFY2Q96P53 400 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TEFMQ96QE5 360 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 ATOH8Q96SQ7 321 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ZNF382Q96SR6 550 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 BARD1Q99728 777 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 APOL2Q9BQE5 337 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TMEM246Q9BRR3 403 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 MENTQ9BUN1 341 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TRIM62Q9BVG3 475 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 C19orf24Q9BVV8 132 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 FSD1LQ9BXM9 530 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 GABARAPL3Q9BY60 117 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 B3GNT5Q9BYG0 378 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 MAGEB5Q9BZ81 275 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 C6orf62Q9GZU0 229 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 NUAK2Q9H093 628 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 RACGAP1Q9H0H5 632 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TUBB1Q9H4B7 451 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ALG9Q9H6U8 611 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 NIPAL2Q9H841 368 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms