RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MON1BQ7L1V2 547 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 BNIPLQ7Z465 357 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ERICH1Q86X53 443 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ADGRG3Q86Y34 549 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 MAP7D3Q8IWC1 876 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 PALM2Q8IXS6 379 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 TTC9BQ8N6N2 239 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 NPEPL1Q8NDH3 523 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 CCDC148Q8NFR7 591 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 OR14A16Q8NHC5 309 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 TMEM163Q8TC26 289 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 SSC4DQ8WTU2 575 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 FAM3CQ92520 227 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 DVL3Q92997 716 aaPredicted RBP5.3□□□□□ -1.56
VPS53-219ENST00000576019 PLEKHG4BQ96PX9 1271 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 GPR61Q9BZJ8 451 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 WDR76Q9H967 626 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ACKR4Q9NPB9 350 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 NOX4Q9NPH5 578 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 TMEM184CQ9NVA4 438 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 PCDHA7Q9UN72 937 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 SRPRBQ9Y5M8 271 aaKnown RBP5.3□□□□□ -1.56
VPS53-219ENST00000576019 PI4KAP42356 2102 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ACANP16112 2415 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 A0A0G2JK05 382 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 MFSD2BA6NFX1 497 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 LACTBL1A8MY62 500 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 C17orf105B2RV13 164 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 E5RGE8 158 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 CCL24O00175 119 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 CHUKO15111 745 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 ITM2AO43736 263 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 RNF224P0DH78 156 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 EZRP15311 586 aaKnown RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 FBLP22087 321 aaKnown RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 ALDH4A1P30038 563 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 MNDAP41218 407 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 SLC1A6P48664 564 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 PRRX1P54821 245 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 AIF1P55008 147 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 KCNK10P57789 538 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 NLRP11P59045 1033 aaKnown RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 HERV-K104P63124 156 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 NUCB2P80303 420 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 MYBPC1Q00872 1141 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 MSLNQ13421 630 aaPredicted RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 TMEM119Q4V9L6 283 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 TTC27Q6P3X3 843 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 CD164L2Q6UWJ8 174 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 ZNF813Q6ZN06 617 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 OTUD6AQ7L8S5 288 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 NAXDQ8IW45 347 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 GBGT1Q8N5D6 347 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 LRRC17Q8N6Y2 441 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 OR11H4Q8NGC9 324 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 OR13J1Q8NGT2 312 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 RNF128Q8TEB7 428 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 UBTD2Q8WUN7 234 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 ZFYVE19Q96K21 471 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 MARK4Q96L34 752 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 LGMNQ99538 433 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 PRMT1Q99873 361 aaKnown RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 JPH2Q9BR39 696 aaPredicted RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 ZBP1Q9H171 429 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 RIMS4Q9H426 269 aaPredicted RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 EVA1AQ9H8M9 152 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 UPF2Q9HAU5 1272 aaKnown RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 FAM207AQ9NSI2 230 aaPredicted RBP5.29□□□□□ -1.56
VPS53-219ENST00000576019 NSG2Q9Y328 171 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 ABCA7Q8IZY2 2146 aa5.29□□□□□ -1.56
VPS53-219ENST00000576019 TGP01266 2768 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 BIRC6Q9NR09 4857 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SF3B1O75533 1304 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS53-219ENST00000576019 KAT6AQ92794 2004 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 TNRC6BQ9UPQ9 1833 aaKnown RBP5.28□□□□□ -1.56
VPS53-219ENST00000576019 GSAPA4D1B5 854 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 H0Y8G0 127 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 LGALS8O00214 317 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 EEF2KO00418 725 aaKnown RBP5.28□□□□□ -1.56
VPS53-219ENST00000576019 DVL1O14640 695 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 PRRG1O14668 218 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SCO2O43819 266 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 EXTL3O43909 919 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 MFN2O95140 757 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SYNGR4O95473 234 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 BAG3O95817 575 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 MBD3O95983 291 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 LDLRP01130 860 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SFTPBP07988 381 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 KRT19P08727 400 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 UQCRFS1P1P0C7P4 283 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SRD5A2P31213 254 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 FCGR2BP31994 310 aaPredicted RBP5.28□□□□□ -1.56
VPS53-219ENST00000576019 CA8P35219 290 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 RPL3P39023 403 aaKnown RBP5.28□□□□□ -1.56
VPS53-219ENST00000576019 TNFRSF4P43489 277 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 AVPR1BP47901 424 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 NR2C2P49116 596 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SELENOVP59797 346 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 DMP1Q13316 513 aaPredicted RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms