RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PACSIN1Q9BY11 444 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 PTGDR2Q9Y5Y4 395 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 DPRXA6NFQ7 191 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 CAPN14A8MX76 684 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 SHISA9B4DS77 424 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 H3BMM5 538 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 RAMP1O60894 148 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 GAS8O95995 478 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 SERPING1P05155 500 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 SERPINA6P08185 405 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 ADH6P28332 368 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 TTKP33981 857 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 C21orf58P58505 322 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 EFTUD2Q15029 972 aaKnown RBP eCLIP14.47□□□□□ -0.09
VPS53-218ENST00000575207 BBS12Q6ZW61 710 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 CHMP1BQ7LBR1 199 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 TRPV3Q8NET8 790 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 OR52K1Q8NGK4 314 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 PEX13Q92968 403 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 CSF3RQ99062 836 aa14.47□□□□□ -0.09
VPS53-218ENST00000575207 ESPNB1AK53 854 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 ALDOAP04075 364 aaKnown RBP14.46□□□□□ -0.09
VPS53-218ENST00000575207 HKR1P10072 659 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 CCND1P24385 295 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 ADRA1DP25100 572 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 KCNC1P48547 511 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 PDLIM4P50479 330 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 CDH17Q12864 832 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 CCDC181Q5TID7 509 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 DARS2Q6PI48 645 aaKnown RBP14.46□□□□□ -0.09
VPS53-218ENST00000575207 ANGPTL8Q6UXH0 198 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 RINLQ6ZS11 566 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 LINC00523Q86TU6 105 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 TAGAPQ8N103 731 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 ANKRD53Q8N9V6 530 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 STEAP2Q8NFT2 490 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 SLC35G2Q8TBE7 412 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 S100PBPQ96BU1 408 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 FAR2Q96K12 515 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 WWTR1Q9GZV5 400 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 SPNS1Q9H2V7 528 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 ACTR8Q9H981 624 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 NENFQ9UMX5 172 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 HYOU1Q9Y4L1 999 aa14.46□□□□□ -0.09
VPS53-218ENST00000575207 MACROD2A1Z1Q3 448 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 TNFRSF21O75509 655 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 CBR3O75828 277 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 METTL18O95568 372 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 IL11P20809 199 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 PCMT1P22061 227 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 DEKP35659 375 aaKnown RBP14.45□□□□□ -0.1
VPS53-218ENST00000575207 SLC1A1P43005 524 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 CDH11P55287 796 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 EIF3EP60228 445 aaKnown RBP14.45□□□□□ -0.1
VPS53-218ENST00000575207 RPP38P78345 283 aaKnown RBP14.45□□□□□ -0.1
VPS53-218ENST00000575207 GPS1Q13098 491 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 CTU2Q2VPK5 515 aaKnown RBP14.45□□□□□ -0.1
VPS53-218ENST00000575207 TOR1AIP1Q5JTV8 583 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 TMEM64Q6YI46 380 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 BEND4Q6ZU67 534 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 PRELID2Q8N945 189 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 OR6K3Q8NGY3 331 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 PIWIL2Q8TC59 973 aaKnown RBP14.45□□□□□ -0.1
VPS53-218ENST00000575207 ACTL9Q8TC94 416 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 GAL3ST4Q96RP7 486 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 HAUS8Q9BT25 410 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 HEMGNQ9BXL5 484 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.45□□□□□ -0.11e-7■□□□□ 10.9
VPS53-218ENST00000575207 ZNF175Q9Y473 711 aa14.45□□□□□ -0.1
VPS53-218ENST00000575207 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.45□□□□□ -0.1
VPS53-218ENST00000575207 E5RI56 91 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 HRKO00198 91 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 PSMD3O43242 534 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 LY6HO94772 140 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 ESR1P03372 595 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 RHOXF2BP0C7M4 288 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 MPC1LP0DKB6 136 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 COX7A2P14406 83 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 SAT1P21673 171 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 UBE2HP62256 183 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 MYL5Q02045 173 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 KIF5AQ12840 1032 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 NAE1Q13564 534 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 EBPQ15125 230 aaKnown RBP14.44□□□□□ -0.1
VPS53-218ENST00000575207 TAB1Q15750 504 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 TRIM40Q6P9F5 258 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 AGTRAPQ6RW13 159 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 CYHR1Q6ZMK1 362 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 UBE2R2Q712K3 238 aaPredicted RBP14.44□□□□□ -0.1
VPS53-218ENST00000575207 SLC29A4Q7RTT9 530 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 LINC01356Q8N9X3 169 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 FNDC9Q8TBE3 224 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 GAL3ST3Q96A11 431 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 FBXL20Q96IG2 436 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 SERHLQ9NQF3 203 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 TAS2R10Q9NYW0 307 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 DAPP1Q9UN19 280 aa14.44□□□□□ -0.1
VPS53-218ENST00000575207 EXO1Q9UQ84 846 aaKnown RBP14.44□□□□□ -0.1
VPS53-218ENST00000575207 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.44□□□□□ -0.12e-6■■■□□ 15.1
VPS53-218ENST00000575207 RYR2Q92736 4967 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms