RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SLC13A4Q9UKG4 626 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 PCM1Q15154 2024 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 FHP07954 510 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 CPN2P22792 545 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 IFNA8P32881 189 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 GPC1P35052 558 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 GIPRP48546 466 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 SP3Q02447 781 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 RAB40BQ12829 278 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 SNAP47Q5SQN1 464 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 KIAA1211LQ6NV74 962 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 PODNL1Q6PEZ8 512 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 C17orf64Q86WR6 236 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 MMP21Q8N119 569 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 OR7G1Q8NGA0 311 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 OR4K5Q8NGD3 323 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 SLC7A13Q8TCU3 470 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 APOBEC4Q8WW27 367 aaKnown RBP10.2□□□□□ -0.78
CCDC40-207ENST00000572253 XAGE5Q8WWM1 108 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 JPH3Q8WXH2 748 aaPredicted RBP10.2□□□□□ -0.78
CCDC40-207ENST00000572253 EXOSC8Q96B26 276 aaKnown RBP10.2□□□□□ -0.78
CCDC40-207ENST00000572253 SLC35G5Q96KT7 338 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 SLC6A18Q96N87 628 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 ZNF582Q96NG8 517 aaPredicted RBP10.2□□□□□ -0.78
CCDC40-207ENST00000572253 AIF1LQ9BQI0 150 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 ING3Q9NXR8 418 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 COMMD3Q9UBI1 195 aa10.2□□□□□ -0.78
CCDC40-207ENST00000572253 PLEKHB1Q9UF11 243 aaPredicted RBP10.2□□□□□ -0.78
CCDC40-207ENST00000572253 FAM240BA0A1B0GVZ2 78 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 PROM1O43490 865 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 CCT3P49368 545 aaKnown RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 CCL23P55773 120 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ARPC4P59998 168 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 PIN1Q13526 163 aaPredicted RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 DOC2BQ14184 412 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 PRSS53Q2L4Q9 553 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 SLC25A30Q5SVS4 291 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ASTLQ6HA08 431 aaPredicted RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 FAM180BQ6P0A1 224 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 SYCE2Q6PIF2 218 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 IQCHQ86VS3 1027 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 UBE2J2Q8N2K1 259 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ZNF740Q8NDX6 193 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 RAD51AP1Q96B01 352 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 RNFT2Q96EX2 444 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 BEX2Q9BXY8 128 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 SPNS1Q9H2V7 528 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ISYNA1Q9NPH2 558 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 GIMAP4Q9NUV9 329 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 A0A1W2PRQ8 180 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 TMEM129A0AVI4 362 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 TBX19O60806 448 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 IRS1P35568 1242 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ETV5P41161 510 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ETV1P50549 477 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 MRPL28Q13084 256 aaKnown RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 GPR19Q15760 415 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 LIPIQ6XZB0 460 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 RRM2BQ7LG56 351 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 RBM45Q8IUH3 476 aaKnown RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 LMNTD1Q8N9Z9 388 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ZNF514Q96K75 400 aaPredicted RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 FYTTD1Q96QD9 318 aaKnown RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 SYNDIG1Q9H7V2 258 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 HMX1Q9NP08 348 aaPredicted RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 KLHL21Q9UJP4 597 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ASF1AQ9Y294 204 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 TET1Q8NFU7 2136 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 TSPAN11A1L157 253 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 TEX28O15482 410 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 PRODHO43272 600 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 CCNYL3P0C7X3 344 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 CTSAP10619 480 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ACP2P11117 423 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 PSKH1P11801 424 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 KELP23276 732 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 RAB25P57735 213 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 RPS25P62851 125 aaKnown RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 UBE3AQ05086 875 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 TPBGQ13641 420 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 KHDRBS2Q5VWX1 349 aaKnown RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 METAP1DQ6UB28 335 aaPredicted RBP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 LCTLQ6UWM7 567 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 CD300LDQ6UXZ3 194 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.19□□□□□ -0.78
CCDC40-207ENST00000572253 Q8N402 240 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ATP6V1C2Q8NEY4 427 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 LRIG1Q96JA1 1093 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 ACAT2Q9BWD1 397 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 PLSCR3Q9NRY6 295 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 SRRDQ9UH36 339 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 PHF11Q9UIL8 331 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 CLCA2Q9UQC9 943 aa10.19□□□□□ -0.78
CCDC40-207ENST00000572253 CARNS1A5YM72 827 aa10.18□□□□□ -0.78
CCDC40-207ENST00000572253 GPR1P46091 355 aa10.18□□□□□ -0.78
CCDC40-207ENST00000572253 GNA13Q14344 377 aa10.18□□□□□ -0.78
CCDC40-207ENST00000572253 DUSP6Q16828 381 aa10.18□□□□□ -0.78
CCDC40-207ENST00000572253 ZNF730Q6ZMV8 503 aa10.18□□□□□ -0.78
CCDC40-207ENST00000572253 CCDC149Q6ZUS6 474 aa10.18□□□□□ -0.78
CCDC40-207ENST00000572253 DDX53Q86TM3 631 aaKnown RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms