RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KLHL29Q96CT2 875 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 APIPQ96GX9 242 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 SGCZQ96LD1 299 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 HES7Q9BYE0 225 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 CXorf21Q9HAI6 301 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 SSU72Q9NP77 194 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 GIMAP4Q9NUV9 329 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 SLC17A7Q9P2U7 560 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 SEC14L3Q9UDX4 400 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 CES1P1Q9UKY3 287 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 CFL2Q9Y281 166 aa12.42□□□□□ -0.42
CLK3-216ENST00000564468 WBP11Q9Y2W2 641 aaKnown RBP12.42□□□□□ -0.42
CLK3-216ENST00000564468 RGS14O43566 566 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 ATP1B1P05026 303 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 ANXA4P09525 319 aaPredicted RBP12.41□□□□□ -0.42
CLK3-216ENST00000564468 NEFHP12036 1026 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 TDGF1P3P51864 188 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 SLC37A1P57057 533 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.41□□□□□ -0.42
CLK3-216ENST00000564468 CEP85LQ5SZL2 805 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 HLA-DQA1Q5Y7H0 255 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 SCIMPQ6UWF3 145 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 IL20RBQ6UXL0 311 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 LRIG3Q6UXM1 1119 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 GFRALQ6UXV0 394 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 DGAT2L6Q6ZPD8 337 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 RTL4Q6ZR62 310 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 RNF165Q6ZSG1 346 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.41□□□□□ -0.42
CLK3-216ENST00000564468 GOLM1Q8NBJ4 401 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 OR7G1Q8NGA0 311 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 UCN3Q969E3 161 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 STMN4Q9H169 189 aaPredicted RBP12.41□□□□□ -0.42
CLK3-216ENST00000564468 LIN28AQ9H9Z2 209 aaKnown RBP12.41□□□□□ -0.42
CLK3-216ENST00000564468 UTS2RQ9UKP6 389 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 DLGAP4Q9Y2H0 992 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 EXPH5Q8NEV8 1989 aa12.41□□□□□ -0.42
CLK3-216ENST00000564468 C2orf92A0A1B0GVN3 265 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 CAPN14A8MX76 684 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 TM9SF1O15321 606 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 TYROBPO43914 113 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 OR6B1O95007 311 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 FGF4P08620 206 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 IL3P08700 152 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 PRPH2P23942 346 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 SERPINB3P29508 390 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 FEN1P39748 380 aaKnown RBP12.4□□□□□ -0.42
CLK3-216ENST00000564468 SOX3P41225 446 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 PER3P56645 1201 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 RAE1P78406 368 aaKnown RBP12.4□□□□□ -0.42
CLK3-216ENST00000564468 PMP22Q01453 160 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 SRSF11Q05519 484 aaKnown RBP12.4□□□□□ -0.42
CLK3-216ENST00000564468 ZNF763Q0D2J5 394 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 FUT7Q11130 342 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 MAP4K2Q12851 820 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 C16orf47Q6ZP98 133 aaPredicted RBP12.4□□□□□ -0.42
CLK3-216ENST00000564468 ZNF227Q86WZ6 799 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 C9orf40Q8IXQ3 194 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 CLYBLQ8N0X4 340 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 TAGAPQ8N103 731 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 LRRC25Q8N386 305 aaPredicted RBP12.4□□□□□ -0.42
CLK3-216ENST00000564468 VWA5B2Q8N398 1253 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 PSD4Q8NDX1 1056 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 PPP1R14CQ8TAE6 165 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 C16orf78Q8WTQ4 265 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 TP53INP1Q96A56 240 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 C11orf24Q96F05 449 aaPredicted RBP12.4□□□□□ -0.42
CLK3-216ENST00000564468 FRMD6Q96NE9 622 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 ZIM3Q96PE6 472 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 GAL3ST4Q96RP7 486 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 WWTR1Q9GZV5 400 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 CENPHQ9H3R5 247 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 PFDN4Q9NQP4 134 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 EHD3Q9NZN3 535 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 ENTPD4Q9Y227 616 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 SLC5A6Q9Y289 635 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 ACTL7BQ9Y614 415 aa12.4□□□□□ -0.42
CLK3-216ENST00000564468 FREM3P0C091 2139 aa12.4□□□□□ -0.43
CLK3-216ENST00000564468 ZNF407Q9C0G0 2248 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 A0A1B0GUH1 482 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 NPIPB8E9PQR5 432 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 HRKO00198 91 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 PEX1O43933 1283 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 SEC22BO75396 215 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 BCAS2O75934 225 aaPredicted RBP12.39□□□□□ -0.43
CLK3-216ENST00000564468 UNC5CO95185 931 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 P04436 131 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 BPGMP07738 259 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 ZNF24P17028 368 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 MST1P26927 711 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 MPIP34949 423 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 MEOX1P50221 254 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 NRG3P56975 720 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 C2orf80Q0P641 193 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 EBPQ15125 230 aaKnown RBP12.39□□□□□ -0.43
CLK3-216ENST00000564468 PRICKLE4Q2TBC4 344 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 ARL13AQ5H913 290 aaPredicted RBP12.39□□□□□ -0.43
CLK3-216ENST00000564468 CLEC6AQ6EIG7 209 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 BNC2Q6ZN30 1099 aaPredicted RBP12.39□□□□□ -0.43
CLK3-216ENST00000564468 NUDCD3Q8IVD9 361 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms