RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PDZD3Q86UT5 571 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 FRMD6Q96NE9 622 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 KCNK12Q9HB15 430 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 NDRG2Q9UN36 371 aaKnown RBP12.51□□□□□ -0.41
CLN3-210ENST00000563874 MAU2Q9Y6X3 613 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 SLC35F4A4IF30 521 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 OR6C70A6NIJ9 312 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 WASHC1A8K0Z3 465 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 NOTOA8MTQ0 251 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 FAAHO00519 579 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 PLPP1O14494 284 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 TP53P04637 393 aaPredicted RBP12.51□□□□□ -0.41
CLN3-210ENST00000563874 CD79BP40259 229 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 DCDC1P59894 354 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 E2F2Q14209 437 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.51□□□□□ -0.41
CLN3-210ENST00000563874 WASH2PQ6VEQ5 465 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 ADIPOR2Q86V24 386 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 VWA5B2Q8N398 1253 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 CADM2Q8N3J6 435 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 OR9A1PQ8NGU1 263 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 OR52P1PQ8NH57 321 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 ENKURQ8TC29 256 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 XAGE5Q8WWM1 108 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 SPOCK3Q9BQ16 436 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 PRR14Q9BWN1 585 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 HMGN4O00479 90 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 CPNE3O75131 537 aaKnown RBP12.51□□□□□ -0.41
CLN3-210ENST00000563874 FOSL1P15407 271 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 MMP11P24347 488 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 MAPK12P53778 367 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 GALK2Q01415 458 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 COL9A2Q14055 689 aaPredicted RBP12.51□□□□□ -0.41
CLN3-210ENST00000563874 SNAPC1Q16533 368 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 SLC35F1Q5T1Q4 408 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 DDI2Q5TDH0 399 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 TYW3Q6IPR3 259 aaKnown RBP12.51□□□□□ -0.41
CLN3-210ENST00000563874 XKRXQ6PP77 449 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 ZER1Q7Z7L7 766 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 LAPTM4BQ86VI4 370 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 IQCHQ86VS3 1027 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 KLHDC8AQ8IYD2 350 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 NEURL3Q96EH8 262 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 KATNB1Q9BVA0 655 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 SGPP1Q9BX95 441 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 RNF121Q9H920 327 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 RPRD1BQ9NQG5 326 aaKnown RBP12.51□□□□□ -0.41
CLN3-210ENST00000563874 CLCA3PQ9Y6N3 262 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 CENPBD1B2RD01 187 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 QSOX1O00391 747 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 NCR1O76036 304 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 NTN1O95631 604 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 EPHX1P07099 455 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 OR12D1P0DN82 309 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 TYRP14679 529 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 MAN2A2P49641 1150 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 NFE2L1Q14494 772 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 UNC5DQ6UXZ4 953 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 TECPR1Q7Z6L1 1165 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 SLC9B2Q86UD5 537 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 OR4K5Q8NGD3 323 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 KCTD7Q96MP8 289 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 ZNF582Q96NG8 517 aaPredicted RBP12.5□□□□□ -0.41
CLN3-210ENST00000563874 TREX2Q9BQ50 279 aaPredicted RBP12.5□□□□□ -0.41
CLN3-210ENST00000563874 PLA2G12AQ9BZM1 189 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 EGLN3Q9H6Z9 239 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 HCFC1R1Q9NWW0 138 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 KLF15Q9UIH9 416 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 PRAMEF27A3QJZ7 478 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 PITPNM1O00562 1244 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 POLR1CO15160 346 aaPredicted RBP12.5□□□□□ -0.41
CLN3-210ENST00000563874 RAB36O95755 333 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 IL1AP01583 271 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 YES1P07947 543 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 PSKH1P11801 424 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 CCR2P41597 374 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 RPS5P46782 204 aaKnown RBP12.5□□□□□ -0.41
CLN3-210ENST00000563874 KCNJ5P48544 419 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 PNLIPRP1P54315 467 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 INSL4Q14641 139 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 CCDC58Q4VC31 144 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 SYCE2Q6PIF2 218 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 LYPD8Q6UX82 237 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 LIPIQ6XZB0 460 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 TMC8Q8IU68 726 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 RDH10Q8IZV5 341 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 VN1R2Q8NFZ6 395 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 SLC9A6Q92581 669 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 ZNF354BQ96LW1 612 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 GDF15Q99988 308 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 YIPF4Q9BSR8 244 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 SERHL2Q9H4I8 314 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 TRPC4Q9UBN4 977 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 NDOR1Q9UHB4 597 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 A4GNTQ9UNA3 340 aa12.5□□□□□ -0.41
CLN3-210ENST00000563874 MYO7AQ13402 2215 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 FEZF1A0PJY2 475 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 PDPK1O15530 556 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 TGM5O43548 720 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 TBX6O95947 436 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms