RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NINQ8N4C6 2090 aa15.05■□□□□ -0
CLN3-208ENST00000561505 A0A1W2PR48 441 aa15.04■□□□□ -0
CLN3-208ENST00000561505 TCRBV9S1A1TA0A576 114 aa15.04■□□□□ -0
CLN3-208ENST00000561505 WASHC1A8K0Z3 465 aa15.04■□□□□ -0
CLN3-208ENST00000561505 EFCAB8A8MWE9 144 aa15.04■□□□□ -0
CLN3-208ENST00000561505 H0YIV9 168 aa15.04■□□□□ -0
CLN3-208ENST00000561505 SAP18O00422 153 aaKnown RBP15.04■□□□□ -0
CLN3-208ENST00000561505 KERAO60938 352 aa15.04■□□□□ -0
CLN3-208ENST00000561505 RAF1P04049 648 aa15.04■□□□□ -0
CLN3-208ENST00000561505 PTX3P26022 381 aaPredicted RBP15.04■□□□□ -0
CLN3-208ENST00000561505 BUD31P41223 144 aaPredicted RBP15.04■□□□□ -0
CLN3-208ENST00000561505 TRPC1P48995 793 aa15.04■□□□□ -0
CLN3-208ENST00000561505 ZNF267Q14586 743 aaPredicted RBP15.04■□□□□ -0
CLN3-208ENST00000561505 RPS6KA2Q15349 733 aa15.04■□□□□ -0
CLN3-208ENST00000561505 LIPJQ5W064 366 aa15.04■□□□□ -0
CLN3-208ENST00000561505 TMEM198Q66K66 360 aa15.04■□□□□ -0
CLN3-208ENST00000561505 TAGAPQ8N103 731 aa15.04■□□□□ -0
CLN3-208ENST00000561505 MMP21Q8N119 569 aa15.04■□□□□ -0
CLN3-208ENST00000561505 RNF175Q8N4F7 328 aa15.04■□□□□ -0
CLN3-208ENST00000561505 ZNF615Q8N8J6 731 aa15.04■□□□□ -0
CLN3-208ENST00000561505 FAM13CQ8NE31 585 aa15.04■□□□□ -0
CLN3-208ENST00000561505 CDKL2Q92772 493 aa15.04■□□□□ -0
CLN3-208ENST00000561505 RIT1Q92963 219 aa15.04■□□□□ -0
CLN3-208ENST00000561505 ADIPOR1Q96A54 375 aa15.04■□□□□ -0
CLN3-208ENST00000561505 ZNF597Q96LX8 424 aa15.04■□□□□ -0
CLN3-208ENST00000561505 CALHM2Q9HA72 323 aa15.04■□□□□ -0
CLN3-208ENST00000561505 CXorf21Q9HAI6 301 aa15.04■□□□□ -0
CLN3-208ENST00000561505 SNX15Q9NRS6 342 aa15.04■□□□□ -0
CLN3-208ENST00000561505 LYARQ9NX58 379 aaKnown RBP15.04■□□□□ -0
CLN3-208ENST00000561505 OPTCQ9UBM4 332 aa15.04■□□□□ -0
CLN3-208ENST00000561505 NPFFR2Q9Y5X5 522 aa15.04■□□□□ -0
CLN3-208ENST00000561505 CAPN14A8MX76 684 aa15.03■□□□□ -0
CLN3-208ENST00000561505 TP53I11O14683 189 aa15.03■□□□□ -0
CLN3-208ENST00000561505 ZSCAN12O43309 604 aa15.03■□□□□ -0
CLN3-208ENST00000561505 TMPRSS11DO60235 418 aa15.03■□□□□ -0
CLN3-208ENST00000561505 UGDHO60701 494 aa15.03■□□□□ -0
CLN3-208ENST00000561505 EEDO75530 441 aaKnown RBP15.03■□□□□ -0
CLN3-208ENST00000561505 IL2RAP01589 272 aa15.03■□□□□ -0
CLN3-208ENST00000561505 GSTA2P09210 222 aa15.03■□□□□ -0
CLN3-208ENST00000561505 FREM3P0C091 2139 aa15.03■□□□□ -0
CLN3-208ENST00000561505 EPB42P16452 691 aa15.03■□□□□ -0
CLN3-208ENST00000561505 CASP3P42574 277 aa15.03■□□□□ -0
CLN3-208ENST00000561505 DEFB113Q30KQ7 82 aa15.03■□□□□ -0
CLN3-208ENST00000561505 ADGRE4PQ86SQ3 457 aa15.03■□□□□ -0
CLN3-208ENST00000561505 KIF18BQ86Y91 864 aa15.03■□□□□ -0
CLN3-208ENST00000561505 KRTAP1-3Q8IUG1 177 aa15.03■□□□□ -0
CLN3-208ENST00000561505 LIX1Q8N485 282 aa15.03■□□□□ -0
CLN3-208ENST00000561505 RHEBL1Q8TAI7 183 aa15.03■□□□□ -0
CLN3-208ENST00000561505 WDR20Q8TBZ3 569 aa15.03■□□□□ -0
CLN3-208ENST00000561505 PYROXD1Q8WU10 500 aa15.03■□□□□ -0
CLN3-208ENST00000561505 HSPBAP1Q96EW2 488 aa15.03■□□□□ -0
CLN3-208ENST00000561505 WDYHV1Q96HA8 205 aa15.03■□□□□ -0
CLN3-208ENST00000561505 TMEM41AQ96HV5 264 aa15.03■□□□□ -0
CLN3-208ENST00000561505 UCN2Q96RP3 112 aa15.03■□□□□ -0
CLN3-208ENST00000561505 ALG9Q9H6U8 611 aa15.03■□□□□ -0
CLN3-208ENST00000561505 NMRAL1Q9HBL8 299 aa15.03■□□□□ -0
CLN3-208ENST00000561505 C15orf41Q9Y2V0 281 aa15.03■□□□□ -0
CLN3-208ENST00000561505 PCDHGA11Q9Y5H2 935 aa15.03■□□□□ -0
CLN3-208ENST00000561505 MPDZO75970 2070 aa15.02■□□□□ -0
CLN3-208ENST00000561505 C2orf92A0A1B0GVN3 265 aa15.02■□□□□ -0
CLN3-208ENST00000561505 FOXE1O00358 373 aaPredicted RBP15.02■□□□□ -0
CLN3-208ENST00000561505 SH3BGRLO75368 114 aa15.02■□□□□ -0
CLN3-208ENST00000561505 PRKRAO75569 313 aaKnown RBP15.02■□□□□ -0
CLN3-208ENST00000561505 FAM58BPP0C7Q3 252 aa15.02■□□□□ -0
CLN3-208ENST00000561505 PCNAP12004 261 aa15.02■□□□□ -0
CLN3-208ENST00000561505 NAGAP17050 411 aa15.02■□□□□ -0
CLN3-208ENST00000561505 S1PR1P21453 382 aa15.02■□□□□ -0
CLN3-208ENST00000561505 TACR1P25103 407 aa15.02■□□□□ -0
CLN3-208ENST00000561505 CTSSP25774 331 aa15.02■□□□□ -0
CLN3-208ENST00000561505 GDF1P27539 372 aa15.02■□□□□ -0
CLN3-208ENST00000561505 SPRP35270 261 aaPredicted RBP15.02■□□□□ -0
CLN3-208ENST00000561505 GMPRP36959 345 aa15.02■□□□□ -0
CLN3-208ENST00000561505 WNT3P56703 355 aa15.02■□□□□ -0
CLN3-208ENST00000561505 GPX6P59796 221 aa15.02■□□□□ -0
CLN3-208ENST00000561505 GRTP1Q5TC63 336 aa15.02■□□□□ -0
CLN3-208ENST00000561505 BIVMQ86UB2 503 aa15.02■□□□□ -0
CLN3-208ENST00000561505 L3MBTL4Q8NA19 623 aa15.02■□□□□ -0
CLN3-208ENST00000561505 ZPLD1Q8TCW7 415 aa15.02■□□□□ -0
CLN3-208ENST00000561505 DIO2Q92813 273 aa15.02■□□□□ -0
CLN3-208ENST00000561505 RILPQ96NA2 401 aa15.02■□□□□ -0
CLN3-208ENST00000561505 CENPKQ9BS16 269 aa15.02■□□□□ -0
CLN3-208ENST00000561505 UGT2B28Q9BY64 529 aa15.02■□□□□ -0
CLN3-208ENST00000561505 SNX24Q9Y343 169 aa15.02■□□□□ -0
CLN3-208ENST00000561505 C15orf38-AP3S2A0A0A6YYH1 394 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 TUBAL3A6NHL2 446 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 UBXN8O00124 270 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 CDH16O75309 829 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 ACSL3O95573 720 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 S100BP04271 92 aaPredicted RBP15.01□□□□□ -0.01
CLN3-208ENST00000561505 CPN1P15169 458 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 BMP7P18075 431 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 PTPN6P29350 595 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 OPRM1P35372 400 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 PCYT1AP49585 367 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 DGKQP52824 942 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 FBXW4P57775 412 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 RPS13P62277 151 aaKnown RBP15.01□□□□□ -0.01
CLN3-208ENST00000561505 SETDB1Q15047 1291 aa15.01□□□□□ -0.01
CLN3-208ENST00000561505 PCBP2Q15366 365 aaKnown RBP eCLIP15.01□□□□□ -0.01
CLN3-208ENST00000561505 BICRALQ6AI39 1079 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms