RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 FRKP42685 505 aaPredicted RBP20.27■□□□□ 0.84
SNX1-210ENST00000560260 RHDQ02161 417 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 DUSP8Q13202 625 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 ZNF267Q14586 743 aaPredicted RBP20.27■□□□□ 0.84
SNX1-210ENST00000560260 ZNF628Q5EBL2 1059 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 C7orf57Q8NEG2 295 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 COQ8BQ96D53 544 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 VMP1Q96GC9 406 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 SENP5Q96HI0 755 aaPredicted RBP20.27■□□□□ 0.84
SNX1-210ENST00000560260 AMDHD1Q96NU7 426 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 BBS4Q96RK4 519 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 SIKE1Q9BRV8 207 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 CNPPD1Q9BV87 410 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 LHPPQ9H008 270 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 GIMAP4Q9NUV9 329 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 GPR83Q9NYM4 423 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 CACNA1BQ00975 2339 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 TRBV11-1A0A0K0K1C0 115 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 K7EM74 188 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 PDGFAP04085 211 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 S1PR1P21453 382 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 NTSP30990 170 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 SSTR4P31391 388 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 SOX11P35716 441 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 ZFP36L2P47974 494 aaKnown RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 NCBP2P52298 156 aaKnown RBP eCLIP20.27■□□□□ 0.83
SNX1-210ENST00000560260 MRPS35P82673 323 aaKnown RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 MYBPC3Q14896 1274 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 PDCD4Q53EL6 469 aaKnown RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 B3GNTL1Q67FW5 361 aaPredicted RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 ZNF551Q7Z340 670 aaPredicted RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 R3HCC1LQ7Z5L2 792 aaKnown RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 CAMKMTQ7Z624 323 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 SAMD14Q8IZD0 417 aaPredicted RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 SIRT6Q8N6T7 355 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 EXD3Q8N9H8 876 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 OR1N1Q8NGS0 311 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 ZNF675Q8TD23 568 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 CTHRC1Q96CG8 243 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 ZNF552Q9H707 407 aaPredicted RBP20.27■□□□□ 0.83
SNX1-210ENST00000560260 ANKRA2Q9H9E1 313 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 ZNF639Q9UID6 485 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 LHX6Q9UPM6 363 aa20.27■□□□□ 0.83
SNX1-210ENST00000560260 MAN1A2O60476 641 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 CBX7O95931 251 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 ICAM2P13598 275 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 IDO1P14902 403 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 PCSK2P16519 638 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 RPL3P39023 403 aaKnown RBP20.26■□□□□ 0.83
SNX1-210ENST00000560260 WNT3P56703 355 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 PHC1P78364 1004 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 FUT7Q11130 342 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 GSTA3Q16772 222 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 CPTPQ5TA50 214 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 FCRLBQ6BAA4 426 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 FAM9CQ8IZT9 166 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 OR9I1Q8NGQ6 314 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 KAT2AQ92830 837 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 CLMPQ9H6B4 373 aa20.26■□□□□ 0.83
SNX1-210ENST00000560260 SDR39U1Q9NRG7 319 aaPredicted RBP20.26■□□□□ 0.83
SNX1-210ENST00000560260 COPG1Q9Y678 874 aaKnown RBP20.26■□□□□ 0.83
SNX1-210ENST00000560260 BSNQ9UPA5 3926 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 CPAMD8Q8IZJ3 1885 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 DRD4P21917 467 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 CDK9P50750 372 aaKnown RBP20.25■□□□□ 0.83
SNX1-210ENST00000560260 MAP4K2Q12851 820 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 KCNAB2Q13303 367 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 EXOSC7Q15024 291 aaKnown RBP20.25■□□□□ 0.83
SNX1-210ENST00000560260 TRMT12Q53H54 448 aaKnown RBP20.25■□□□□ 0.83
SNX1-210ENST00000560260 SPANXN4Q5MJ08 99 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 FHL5Q5TD97 284 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 OR4F3Q6IEY1 312 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 H3F3CQ6NXT2 135 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 JMJD6Q6NYC1 403 aaPredicted RBP20.25■□□□□ 0.83
SNX1-210ENST00000560260 PAOXQ6QHF9 649 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 C9orf40Q8IXQ3 194 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 VWA5B2Q8N398 1253 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 ZNF615Q8N8J6 731 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 OR7G2Q8NG99 324 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 C10orf82Q8WW14 230 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 TESCQ96BS2 214 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 ZNF385DQ9H6B1 395 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 ZBTB20Q9HC78 741 aaPredicted RBP20.25■□□□□ 0.83
SNX1-210ENST00000560260 PTGFRNQ9P2B2 879 aa20.25■□□□□ 0.83
SNX1-210ENST00000560260 TNRC6AQ8NDV7 1962 aaKnown RBP20.25■□□□□ 0.83
SNX1-210ENST00000560260 TMEM200CA6NKL6 621 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 CD1EP15812 388 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 GPX3P22352 226 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 MPIP34949 423 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 MRPL19P49406 292 aaKnown RBP20.24■□□□□ 0.83
SNX1-210ENST00000560260 CLCN2P51788 898 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 ARFIP2P53365 341 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 SLC37A1P57057 533 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 HSPB3Q12988 150 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 ABHD17AQ96GS6 310 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 SLC25A23Q9BV35 468 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 DUSP26Q9BV47 211 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 BHLHE41Q9C0J9 482 aaPredicted RBP20.24■□□□□ 0.83
SNX1-210ENST00000560260 ACSS1Q9NUB1 689 aaPredicted RBP20.24■□□□□ 0.83
SNX1-210ENST00000560260 ZIM2Q9NZV7 527 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms