RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	OSBPL11	Q9BXB4	747 aa		11.73	□□□□□ -0.53
SHMT2-233	ENST00000557529	SERHL2	Q9H4I8	314 aa		11.73	□□□□□ -0.53
SHMT2-233	ENST00000557529	ZNF768	Q9H5H4	540 aa	Known RBP	11.73	□□□□□ -0.53
SHMT2-233	ENST00000557529	NTN4	Q9HB63	628 aa		11.73	□□□□□ -0.53
SHMT2-233	ENST00000557529	FSCN3	Q9NQT6	498 aa		11.73	□□□□□ -0.53
SHMT2-233	ENST00000557529	DDX18	Q9NVP1	670 aa	Known RBP	11.73	□□□□□ -0.53
SHMT2-233	ENST00000557529	ZDBF2	Q9HCK1	2354 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	LY6G6E	A0A0G2JKS1	128 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529		A0A1W2PS29	197 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	CPED1	A4D0V7	1026 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	EME2	A4GXA9	379 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	SOCS2	O14508	198 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	ACOX3	O15254	700 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	DENR	O43583	198 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	SLC28A2	O43868	658 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	FGF17	O60258	216 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	PCDHGA12	O60330	932 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	DPM1	O60762	260 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR2B3	O76000	313 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	AGR2	O95994	175 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	HMGN2	P05204	90 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	BCHE	P06276	602 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR12D1	P0DN82	309 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	MYF5	P13349	255 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	NELFE	P18615	380 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	AVPR2	P30518	371 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	SEPHS1	P49903	392 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	CRYBA2	P53672	197 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	LASP1	Q14847	261 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	ANGPT1	Q15389	498 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	LTB4R	Q15722	352 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	NRF1	Q16656	503 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	CLPP	Q16740	277 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	IFI44L	Q53G44	452 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	PRAMEF8	Q5VWM4	474 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	PRAMEF7	Q5VXH5	474 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	GUSBP11	Q6P575	273 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	TMEM71	Q6P5X7	295 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	TLDC1	Q6P9B6	456 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	VTCN1	Q7Z7D3	282 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	ARMC8	Q8IUR7	673 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	EPHX4	Q8IUS5	362 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR4N5	Q8IXE1	308 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	ZNF595	Q8IYB9	648 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	LGI4	Q8N135	537 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR2L13	Q8N349	312 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR10Q1	Q8NGQ4	319 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	RASSF5	Q8WWW0	418 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	RAB8B	Q92930	207 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	COL26A1	Q96A83	441 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	TAMM41	Q96BW9	452 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	MVB12A	Q96EY5	273 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	TMEM19	Q96HH6	336 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	LOXL4	Q96JB6	756 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	MS4A4E	Q96PG1	132 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	NR1H4	Q96RI1	486 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	ACTRT3	Q9BYD9	372 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	SPRTN	Q9H040	489 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	FANCE	Q9HB96	536 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	CUTC	Q9NTM9	273 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	RAB23	Q9ULC3	237 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	AP4B1	Q9Y6B7	739 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529		U3KQA8	63 aa		11.72	□□□□□ -0.53
SHMT2-233	ENST00000557529	SCN3A	Q9NY46	2000 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529		A0A087WV62	115 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	DUXA	A6NLW8	204 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	TMEM150C	B9EJG8	249 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	FAM227A	F5H4B4	570 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	PDLIM1	O00151	329 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	UPK1A	O00322	258 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	CLDN4	O14493	209 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	E2F6	O75461	281 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	SERPINB7	O75635	380 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	PGM3	O95394	542 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	CPNE6	O95741	557 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	ANKRD34C	P0C6C1	535 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	SLC35E2	P0CK97	266 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	NR2F1	P10589	423 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	ITGA2	P17301	1181 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	DUSP3	P51452	185 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	CRISP3	P54108	245 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	KCNJ10	P78508	379 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	KCNAB1	Q14722	419 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	ZNF628	Q5EBL2	1059 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	SNAP47	Q5SQN1	464 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR2T5	Q6IEZ7	315 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	KRT73	Q86Y46	540 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	HIPK1	Q86Z02	1210 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	ZDHHC13	Q8IUH4	622 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	GPR135	Q8IZ08	494 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	EID2	Q8N6I1	236 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	TMEM52	Q8NDY8	209 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR7G2	Q8NG99	324 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR2T29	Q8NH02	315 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	OR5K1	Q8NHB7	308 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	BBS10	Q8TAM1	723 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	ZNF675	Q8TD23	568 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	XAGE5	Q8WWM1	108 aa		11.71	□□□□□ -0.53
SHMT2-233	ENST00000557529	GEMIN6	Q8WXD5	167 aa	Known RBP	11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms