RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SELENOWP63302 87 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 CSNK2BP67870 215 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 C6orf141Q5SZD1 244 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 SLC48A1Q6P1K1 146 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 ZNF793Q6ZN11 406 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 RNF44Q7L0R7 432 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 VN1R4Q7Z5H5 301 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 STK32CQ86UX6 486 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 RNF130Q86XS8 419 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 SIX5Q8N196 739 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 SETD9Q8NE22 299 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 FAM46DQ8NEK8 389 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 OR56A1Q8NGH5 318 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 OR6Q1Q8NGQ2 317 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 OR10G6Q8NH81 332 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 BAHD1Q8TBE0 780 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-229ENST00000557348 MAGEE2Q8TD90 523 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-229ENST00000557348 EXOSC8Q96B26 276 aaKnown RBP11.96□□□□□ -0.5
SHMT2-229ENST00000557348 HSH2DQ96JZ2 352 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 DACH2Q96NX9 599 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 OR2A5Q96R48 311 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 LHPPQ9H008 270 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 KLHL25Q9H0H3 589 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 GABARAPL1Q9H0R8 117 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 CXorf36Q9H7Y0 433 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 HRASLS2Q9NWW9 162 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 RAPGEFL1Q9UHV5 662 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 PILRAQ9UKJ1 303 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 SNX8Q9Y5X2 465 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 LRP4O75096 1905 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 A0A1W2PR77 199 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 LILRA5A6NI73 299 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 C5orf58C9J3I9 102 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 J3QRK9 145 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 M0R3G1 203 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 TLR4O00206 839 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 ADAMDEC1O15204 470 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 B3GALT2O43825 422 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 SH3BP5O60239 455 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 ALPLP05186 524 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 NR2F6P10588 404 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 ETFAP13804 333 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 CSNK2A2P19784 350 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-229ENST00000557348 FPR1P21462 350 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 PPP2R1BP30154 601 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 DNAJA1P31689 397 aaKnown RBP11.95□□□□□ -0.5
SHMT2-229ENST00000557348 IDUAP35475 653 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 RPL6Q02878 288 aaKnown RBP11.95□□□□□ -0.5
SHMT2-229ENST00000557348 NKG7Q16617 165 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 IFI44LQ53G44 452 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 REEP3Q6NUK4 255 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 TMEM214Q6NUQ4 689 aaKnown RBP11.95□□□□□ -0.5
SHMT2-229ENST00000557348 SHQ1Q6PI26 577 aaKnown RBP11.95□□□□□ -0.5
SHMT2-229ENST00000557348 NANOGNBQ7Z5D8 188 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 SVOPQ8N4V2 548 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 GALNT6Q8NCL4 622 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 OR8K5Q8NH50 307 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 AMDHD1Q96NU7 426 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 LRRC61Q9BV99 259 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 FUNDC2Q9BWH2 189 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 KLHL31Q9H511 634 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 TBC1D17Q9HA65 648 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 ZNF780BQ9Y6R6 833 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 DOCK9Q9BZ29 2069 aa11.95□□□□□ -0.5
SHMT2-229ENST00000557348 TRBV23OR9-2A0A075B6M9 112 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ZNF99A8MXY4 864 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 MYO1GB0I1T2 1018 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 PROM1O43490 865 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SEC24DO94855 1032 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SLITRK5O94991 958 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SNX4O95219 450 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 AIFM1O95831 613 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 MT-ND1P03886 318 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 NELFEP18615 380 aaKnown RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 FUT4P22083 530 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 GPC1P35052 558 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 CCT3P49368 545 aaKnown RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 KHKP50053 298 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 PRR5P85299 388 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ZP2Q05996 745 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 HSPB3Q12988 150 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 CEBPEQ15744 281 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 WDR45BQ5MNZ6 344 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 FBXO42Q6P3S6 717 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 CEACAM20Q6UY09 585 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 MAMSTRQ6ZN01 415 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 AKAP14Q86UN6 197 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 RHOXF1Q8NHV9 184 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 FBLIM1Q8WUP2 373 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 GEMIN6Q8WXD5 167 aaKnown RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 RLN3Q8WXF3 142 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 JPH3Q8WXH2 748 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 HPS1Q92902 700 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 FBXL20Q96IG2 436 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SNX18Q96RF0 628 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 FOXQ1Q9C009 403 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 OR2B2Q9GZK3 357 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 MMP27Q9H306 513 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 REEP1Q9H902 201 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 C3orf14Q9HBI5 128 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms