RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NUDT9Q9BW91 350 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 TRIM4Q9C037 500 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 BHLHE41Q9C0J9 482 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 OR8D2Q9GZM6 311 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 NMUR2Q9GZQ4 415 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 GIMAP4Q9NUV9 329 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 CCDC167Q9P0B6 97 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 ARMCX1Q9P291 453 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 ZNF639Q9UID6 485 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 PPIEQ9UNP9 301 aaKnown RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 POLHQ9Y253 713 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 MAN2B2Q9Y2E5 1009 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 KCNMB2Q9Y691 235 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 CLCA3PQ9Y6N3 262 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 A0A1W2PRB8 838 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 FAM234BA2RU67 622 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 ASPDHA6ND91 283 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 FCHO1O14526 889 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 PRKNO60260 465 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 C6orf47O95873 294 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 IGKV3-11P04433 115 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 PGRP06401 933 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 ITGAMP11215 1152 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 NTSP30990 170 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 S100A3P33764 101 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 GALNSP34059 522 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 MPIP34949 423 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 KIR3DL1P43629 444 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 POLR2JP52435 117 aaKnown RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 CLNS1AP54105 237 aaKnown RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 SRSF11Q05519 484 aaKnown RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 MAP4K2Q12851 820 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 HSPB3Q12988 150 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 EXOSC7Q15024 291 aaKnown RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 TERF2Q15554 542 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 SPRED3Q2MJR0 410 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 BTBD16Q32M84 506 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 FHL5Q5TD97 284 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 PLAG1Q6DJT9 500 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 BLOC1S3Q6QNY0 202 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 TMEM107Q6UX40 140 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 GK5Q6ZS86 529 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 MTDHQ86UE4 582 aaKnown RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 GALNT12Q8IXK2 581 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 SAMD14Q8IZD0 417 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 MORN4Q8NDC4 146 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 B3GNT7Q8NFL0 401 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 OR7G2Q8NG99 324 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 OR14A16Q8NHC5 309 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 DAZLQ92904 295 aaKnown RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 NCLNQ969V3 563 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 CTHRC1Q96CG8 243 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 ZBTB18Q99592 522 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 PELOQ9BRX2 385 aaKnown RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 INPP5KQ9BT40 448 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 CNPPD1Q9BV87 410 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 ING2Q9H160 280 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 PRORYQ9H606 182 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 SIRT3Q9NTG7 399 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 ACSS1Q9NUB1 689 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-227ENST00000557269 ATAD3AQ9NVI7 634 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 MAPRE3Q9UPY8 281 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 ERVK-19Q9WJR5 959 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 CROCCQ5TZA2 2017 aa11.94□□□□□ -0.5
SHMT2-227ENST00000557269 A6NL46 340 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 NR5A2O00482 541 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 CBX7O95931 251 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 C1QCP02747 245 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 CAPN3P20807 821 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 MC3RP41968 323 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 MANFP55145 182 aaKnown RBP11.93□□□□□ -0.5
SHMT2-227ENST00000557269 HBA1P69905 142 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 FUT7Q11130 342 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 KLF10Q13118 480 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 RCAN2Q14206 197 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 TBR1Q16650 682 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ST3GAL2Q16842 350 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 VPS26BQ4G0F5 336 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 TIGD2Q4W5G0 525 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 CLEC4FQ8N1N0 589 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 VWA5B2Q8N398 1253 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ZNF615Q8N8J6 731 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 TMEM102Q8N9M5 508 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-227ENST00000557269 GLB1L3Q8NCI6 653 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-227ENST00000557269 OR1N1Q8NGS0 311 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 M1APQ8TC57 530 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ZNF675Q8TD23 568 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ELP5Q8TE02 316 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 PSMF1Q92530 271 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ELP4Q96EB1 424 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ZBED6CLQ96FA7 236 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-227ENST00000557269 FBXL20Q96IG2 436 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 MAGED4Q96JG8 741 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 FER1L6-AS2Q96M78 137 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 OR52E6Q96RD3 313 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 SEMA4CQ9C0C4 833 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 MYLK2Q9H1R3 596 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 CXorf36Q9H7Y0 433 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 MMP25Q9NPA2 562 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ATP13A2Q9NQ11 1180 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms