RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RGS19P49795 217 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 IFRD2Q12894 506 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-226ENST00000556825 OLIG2Q13516 323 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 DUOXA2Q1HG44 320 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 PCID2Q5JVF3 399 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 GCNT6Q5T4J0 391 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 TMUB2Q71RG4 321 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 OR9Q1Q8NGQ5 310 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 NETO1Q8TDF5 533 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 SELENOMQ8WWX9 145 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 SLC39A7Q92504 469 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 THUMPD3Q9BV44 507 aaKnown RBP13.15□□□□□ -0.3
SHMT2-226ENST00000556825 XKR8Q9H6D3 395 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 GFOD1Q9NXC2 390 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 PCDHA10Q9Y5I2 948 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 LRIT2A6NDA9 550 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 COLCA2A8K830 154 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 TOX3O15405 576 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-226ENST00000556825 SUSD5O60279 629 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 TPST2O60704 377 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 IGHV2-5P01817 119 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 ODC1P11926 461 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 UQCRC2P22695 453 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 CD86P42081 329 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 CRATP43155 626 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 RGS4P49798 205 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 STK19P49842 368 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-226ENST00000556825 CTBP2P56545 445 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 SKP2Q13309 424 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 SGO1Q5FBB7 561 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 MSANTD2Q6P1R3 559 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 LRRN1Q6UXK5 716 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 ASB18Q6ZVZ8 466 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 OR10K1Q8NGX5 313 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 PROKR1Q8TCW9 393 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 ZBED3Q96IU2 234 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-226ENST00000556825 TEFMQ96QE5 360 aaKnown RBP13.15□□□□□ -0.31
SHMT2-226ENST00000556825 ZIC5Q96T25 663 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 ADAT1Q9BUB4 502 aaKnown RBP13.15□□□□□ -0.31
SHMT2-226ENST00000556825 WDR11Q9BZH6 1224 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 EGLN1Q9GZT9 426 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 PDLIM7Q9NR12 457 aa13.15□□□□□ -0.31
SHMT2-226ENST00000556825 POLR3HQ9Y535 204 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-226ENST00000556825 LOC285095A0A1B0GVY8 99 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 A8MVJ9 347 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 IFRD1O00458 451 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-226ENST00000556825 ACKR2O00590 384 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 AQP8O94778 261 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 IFNA2P01563 188 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 TFP02787 698 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 SBK2P0C263 348 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 NMBRP28336 390 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 CAP2P40123 477 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 ITGA1P56199 1179 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.14□□□□□ -0.31
SHMT2-226ENST00000556825 CERCAMQ5T4B2 595 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF660Q6AZW8 331 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-226ENST00000556825 GSG1LQ6UXU4 331 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 FAM126BQ8IXS8 530 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF561Q8N587 486 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 OR2L5Q8NG80 312 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 ORAI1Q96D31 301 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 SNRNP25Q9BV90 132 aaKnown RBP13.14□□□□□ -0.31
SHMT2-226ENST00000556825 SPRTNQ9H040 489 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-226ENST00000556825 BARX1Q9HBU1 254 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-226ENST00000556825 OR6C2Q9NZP2 312 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 CFAP97Q9P2B7 532 aa13.14□□□□□ -0.31
SHMT2-226ENST00000556825 C2CD4BA6NLJ0 364 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 DCLK1O15075 740 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 PPIHO43447 177 aaKnown RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 OR8U8P0C7N1 319 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 SLURP2P0DP57 97 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 RNH1P13489 461 aaKnown RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 DDTP30046 118 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 MAD2L1Q13257 205 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 SPHARQ15513 63 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 CDO1Q16878 200 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 TMEM255AQ5JRV8 349 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 KRBOX4Q5JUW0 171 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 C22orf42Q6IC83 251 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 C16orf54Q6UWD8 224 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 CASP12Q6UXS9 341 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 USP30Q70CQ3 517 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 GPBAR1Q8TDU6 330 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 RFT1Q96AA3 541 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 TGIF2Q9GZN2 237 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 TOLLIPQ9H0E2 274 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 CISHQ9NSE2 258 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 VAPAQ9P0L0 249 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 QSER1Q2KHR3 1735 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 UGDHO60701 494 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 FZD7O75084 574 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 ALPIP09923 528 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 MAT1AQ00266 395 aaKnown RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 FOXO1Q12778 655 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 PEA15Q15121 130 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 TSNQ15631 228 aaKnown RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 C10orf91Q5T1B1 145 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 FAM102AQ5T9C2 384 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 TRNP1Q6NT89 227 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms