RNA–Protein interactions for RNA: ENST00000552199.5

RAB3IP-216, Transcript of RAB3A interacting protein, human

TSL 1 (best)

Gene RAB3IP, Length 1,905 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB3IP-216	ENST00000552199	TOE1	Q96GM8	510 aa	Known RBP	13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	SMIM10	Q96HG1	83 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	ALPK1	Q96QP1	1244 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	ROGDI	Q9GZN7	287 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	TCEAL2	Q9H3H9	227 aa	Predicted RBP	13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	ANKMY1	Q9P2S6	941 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	SEC14L3	Q9UDX4	400 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	CYP8B1	Q9UNU6	501 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	RNF6	Q9Y252	685 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	PCDHGA10	Q9Y5H3	936 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	SCN3A	Q9NY46	2000 aa		13.22	□□□□□ -0.29
RAB3IP-216	ENST00000552199	EMC8	O43402	210 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	MRPS14	O60783	128 aa	Known RBP	13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	FAM20B	O75063	409 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	HMGN2	P05204	90 aa	Known RBP	13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	NR2F6	P10588	404 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	POU3F3	P20264	500 aa	Predicted RBP	13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	KRT20	P35900	424 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	DGKE	P52429	567 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	SNRPN	P63162	240 aa	Known RBP	13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	CSNK2B	P67870	215 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	EIF2B5	Q13144	721 aa	Known RBP	13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	LASP1	Q14847	261 aa	Known RBP	13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	TCTN3	Q6NUS6	607 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	TMEM107	Q6UX40	140 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	KRT73	Q86Y46	540 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	ZNF540	Q8NDQ6	660 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	BBS10	Q8TAM1	723 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	FAR1	Q8WVX9	515 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	PATE1	Q8WXA2	126 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	THAP11	Q96EK4	314 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	YIPF4	Q9BSR8	244 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	GSDMC	Q9BYG8	508 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	BCL2L10	Q9HD36	194 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	CCNB1IP1	Q9NPC3	277 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	POT1	Q9NUX5	634 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	CPNE7	Q9UBL6	633 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	PILRA	Q9UKJ1	303 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	HEMK1	Q9Y5R4	338 aa	Predicted RBP	13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199	ZNF780B	Q9Y6R6	833 aa		13.21	□□□□□ -0.29
RAB3IP-216	ENST00000552199		A0A0J9YVX5	310 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	CCDC85C	A6NKD9	419 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	ZNF99	A8MXY4	864 aa	Predicted RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	P2RX6	O15547	441 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	INMT	O95050	263 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	CD6	P30203	668 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	CRISP3	P54108	245 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	GP2	P55259	537 aa	Known RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	UBE2I	P63279	158 aa	Known RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	PRR5	P85299	388 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	SUZ12	Q15022	739 aa	Known RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	ZNF770	Q6IQ21	691 aa	Predicted RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	TAGAP	Q8N103	731 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	PARP8	Q8N3A8	854 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	AQP11	Q8NBQ7	271 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	OR4D11	Q8NGI4	311 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	RAB2B	Q8WUD1	216 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	IPCEF1	Q8WWN9	437 aa	Predicted RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	GTPBP3	Q969Y2	492 aa	Known RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	ELP4	Q96EB1	424 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	C16orf58	Q96GQ5	468 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	DHRS1	Q96LJ7	313 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	C10orf90	Q96M02	699 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	SERINC2	Q96SA4	455 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	DCUN1D5	Q9BTE7	237 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	DGCR6L	Q9BY27	220 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	NMNAT1	Q9HAN9	279 aa	Predicted RBP	13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	C3orf14	Q9HBI5	128 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	KCMF1	Q9P0J7	381 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	KLK4	Q9Y5K2	254 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	ENTPD2	Q9Y5L3	495 aa		13.21	□□□□□ -0.3
RAB3IP-216	ENST00000552199	TRBV4-1	A0A0J9YWV2	114 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199		A0A1W2PPW3	197 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	FAM221B	A6H8Z2	402 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	MBTPS2	O43462	519 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	RGS10	O43665	173 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	SEMA7A	O75326	666 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	GAST	P01350	101 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	CHRM4	P08173	479 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	CDK4	P11802	303 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	CCNA2	P20248	432 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	RELA	Q04206	551 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	FUT5	Q11128	374 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	GNA13	Q14344	377 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	DHRS4L2	Q6PKH6	230 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	RBM45	Q8IUH3	476 aa	Known RBP	13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	FRMD1	Q8N878	549 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	CAMKV	Q8NCB2	501 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	NUP43	Q8NFH3	380 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	OR9A2	Q8NGT5	310 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	RHOXF1	Q8NHV9	184 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	VANGL1	Q8TAA9	524 aa	Predicted RBP	13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	FAM81A	Q8TBF8	368 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	OTUB1	Q96FW1	271 aa	Predicted RBP	13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	RHNO1	Q9BSD3	238 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	SPATA5L1	Q9BVQ7	753 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	PLCXD1	Q9NUJ7	323 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	ENOPH1	Q9UHY7	261 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	PHF11	Q9UIL8	331 aa		13.2	□□□□□ -0.3
RAB3IP-216	ENST00000552199	TMCC3	Q9ULS5	477 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms