RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CFAP36Q96G28 342 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 PBKQ96KB5 322 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 MS4A8Q9BY19 250 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 ANGPTL4Q9BY76 406 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 UBQLN3Q9H347 655 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 WDR41Q9HAD4 459 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 POPDC3Q9HBV1 291 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 FETUBQ9UGM5 382 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 ASIC3Q9UHC3 531 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 MPDZO75970 2070 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 STAB1Q9NY15 2570 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 ATRQ13535 2644 aa15.46■□□□□ 0.06
VPS29-204ENST00000548259 FAM95CA0A1B0GW59 222 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 RTCAO00442 366 aaKnown RBP15.45■□□□□ 0.06
VPS29-204ENST00000548259 RCBTB2O95199 551 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 PCNAP12004 261 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 FNTAP49354 379 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 SLC37A1P57057 533 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 TBCCQ15814 346 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 OR4C11Q6IEV9 310 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 ADNP2Q6IQ32 1131 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 MED27Q6P2C8 311 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 C20orf204Q6ZNR8 217 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 CIARTQ8N365 385 aaPredicted RBP15.45■□□□□ 0.06
VPS29-204ENST00000548259 ZNF441Q8N8Z8 693 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 C9orf106Q8NAJ2 232 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 OR1J4Q8NGS1 313 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 SPPL2AQ8TCT8 520 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 WNT2BQ93097 391 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 RGMAQ96B86 450 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 LRRC39Q96DD0 335 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 RBSNQ9H1K0 784 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 TEX10Q9NXF1 929 aaPredicted RBP15.45■□□□□ 0.06
VPS29-204ENST00000548259 NSMCE4AQ9NXX6 385 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 ADGRE2Q9UHX3 823 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 PACSIN3Q9UKS6 424 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 NPFFR2Q9Y5X5 522 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 ARHGAP21Q5T5U3 1957 aa15.45■□□□□ 0.06
VPS29-204ENST00000548259 H0Y3Z8 333 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 HRKO00198 91 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 PGRMC1O00264 195 aaKnown RBP15.44■□□□□ 0.06
VPS29-204ENST00000548259 DNALI1O14645 258 aaPredicted RBP15.44■□□□□ 0.06
VPS29-204ENST00000548259 BANF1O75531 89 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 GPR75O95800 540 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 TGFB1P01137 390 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 CPN1P15169 458 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 CHMP24386 653 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 GALNSP34059 522 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 CPOXP36551 454 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 HSPA7P48741 367 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 FBXW4P57775 412 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 TAS2R39P59534 338 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 TNFRSF17Q02223 184 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 MGAT5Q09328 741 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 CHIT1Q13231 466 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 ACKR1Q16570 336 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 EIPR1Q53HC9 387 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 WIPI1Q5MNZ9 446 aaPredicted RBP15.44■□□□□ 0.06
VPS29-204ENST00000548259 C6orf163Q5TEZ5 329 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 KHDRBS2Q5VWX1 349 aaKnown RBP15.44■□□□□ 0.06
VPS29-204ENST00000548259 TIGD3Q6B0B8 471 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 ZC3HC1Q86WB0 502 aaKnown RBP15.44■□□□□ 0.06
VPS29-204ENST00000548259 ZNF473Q8WTR7 871 aaKnown RBP15.44■□□□□ 0.06
VPS29-204ENST00000548259 PERPQ96FX8 193 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 TMEM41AQ96HV5 264 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 DERL2Q9GZP9 239 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 METTL7AQ9H8H3 244 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 CD274Q9NZQ7 290 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 TESMINQ9Y4I5 508 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 TLN2Q9Y4G6 2542 aa15.44■□□□□ 0.06
VPS29-204ENST00000548259 A0A1W2PPR1 153 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 CCNT2O60583 730 aaKnown RBP15.43■□□□□ 0.06
VPS29-204ENST00000548259 CDC25BP30305 580 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 ELK3P41970 407 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 CASP3P42574 277 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 CASP2P42575 452 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 NAGLUP54802 743 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 FRG1Q14331 258 aaKnown RBP15.43■□□□□ 0.06
VPS29-204ENST00000548259 ZNF460Q14592 562 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 ANKRD49Q8WVL7 239 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 INTS12Q96CB8 462 aaKnown RBP15.43■□□□□ 0.06
VPS29-204ENST00000548259 TSPAN17Q96FV3 270 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 TMEM79Q9BSE2 394 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 UBTD1Q9HAC8 227 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 LYARQ9NX58 379 aaKnown RBP15.43■□□□□ 0.06
VPS29-204ENST00000548259 TRPS1Q9UHF7 1281 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 CHMP2BQ9UQN3 213 aa15.43■□□□□ 0.06
VPS29-204ENST00000548259 A8MXE2 369 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 SAP18O00422 153 aaKnown RBP15.42■□□□□ 0.06
VPS29-204ENST00000548259 TAPBPO15533 448 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 SH3BGRLO75368 114 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 PCYT1AP49585 367 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 ARFIP1P53367 373 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 ATP6V0D1P61421 351 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 RPS13P62277 151 aaKnown RBP15.42■□□□□ 0.06
VPS29-204ENST00000548259 PHEXP78562 749 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 FOXF2Q12947 444 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 CBLBQ13191 982 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 KBTBD12Q3ZCT8 623 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 MSS51Q4VC12 460 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms