RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 GALNT7Q86SF2 657 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 YRDCQ86U90 279 aaKnown RBP11.61□□□□□ -0.55
SCAF11-208ENST00000546534 GCNT2Q8N0V5 402 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 BBOF1Q8ND07 529 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 C7orf57Q8NEG2 295 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 FAM45AQ8TCE6 357 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 SPPL2AQ8TCT8 520 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 RHBDF1Q96CC6 855 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 DOCK7Q96N67 2140 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 ZFP3Q96NJ6 502 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 PIGQQ9BRB3 760 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 ERVK-6Q9BXR3 956 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 CAPS2Q9BXY5 557 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 GSX2Q9BZM3 304 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 EHD1Q9H4M9 534 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 TEX10Q9NXF1 929 aaPredicted RBP11.61□□□□□ -0.55
SCAF11-208ENST00000546534 KLHL28Q9NXS3 571 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 ERVK-19Q9WJR5 959 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 OARD1Q9Y530 152 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 SPACA6W5XKT8 324 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 MXRA5Q9NR99 2828 aa11.61□□□□□ -0.55
SCAF11-208ENST00000546534 NCF1BA6NI72 391 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 NCF1CA8MVU1 366 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 GNB5O14775 395 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 SH3BGRLO75368 114 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 BANF1O75531 89 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 SCELO95171 688 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 C8BP07358 591 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 NID1P14543 1247 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 NCF1P14598 390 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 CPN1P15169 458 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 ALOX15P16050 662 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 HIST1H1TP22492 207 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 MC3RP41968 323 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 CASP3P42574 277 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 PTH2RP49190 550 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 DIO3P55073 304 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 FAM27E3Q08E93 113 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 DOC2AQ14183 400 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 RPS6KA2Q15349 733 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 TSNQ15631 228 aaKnown RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 SPANXN3Q5MJ09 141 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 TEDDM1Q5T9Z0 273 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 HMBOX1Q6NT76 420 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 ADGRE4PQ86SQ3 457 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 TAGAPQ8N103 731 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF441Q8N8Z8 693 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 SRFBP1Q8NEF9 429 aaKnown RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 ANKRD7Q92527 254 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 CERS2Q96G23 380 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 TM9SF2Q99805 663 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 PIGMQ9H3S5 423 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 RPF2Q9H7B2 306 aaKnown RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 GPRC5BQ9NZH0 403 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 FETUBQ9UGM5 382 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 CORO1CQ9ULV4 474 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 WIF1Q9Y5W5 379 aa11.6□□□□□ -0.55
SCAF11-208ENST00000546534 SONP18583 2426 aaKnown RBP11.6□□□□□ -0.55
SCAF11-208ENST00000546534 OR6C76A6NM76 312 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 CLGNO14967 610 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 TAPBPO15533 448 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 TTC4O95801 387 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 ACTL6AO96019 429 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 CLPSP04118 112 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 PTPN6P29350 595 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 CXCR5P32302 372 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 CPOXP36551 454 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 SRYQ05066 204 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 BIKQ13323 160 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF460Q14592 562 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 AP5B1Q2VPB7 878 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 FBXO48Q5FWF7 155 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 TIGD3Q6B0B8 471 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 C20orf204Q6ZNR8 217 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 FRA10AC1Q70Z53 315 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 IGDCC3Q8IVU1 814 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 ST13P4Q8IZP2 240 aaPredicted RBP11.59□□□□□ -0.55
SCAF11-208ENST00000546534 NKAPQ8N5F7 415 aaKnown RBP11.59□□□□□ -0.55
SCAF11-208ENST00000546534 FAM83FQ8NEG4 500 aaPredicted RBP11.59□□□□□ -0.55
SCAF11-208ENST00000546534 ESAMQ96AP7 390 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 PTCD3Q96EY7 689 aaKnown RBP11.59□□□□□ -0.55
SCAF11-208ENST00000546534 SECISBP2Q96T21 854 aaKnown RBP11.59□□□□□ -0.55
SCAF11-208ENST00000546534 TMEM79Q9BSE2 394 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 G6PC3Q9BUM1 346 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 SORBS1Q9BX66 1292 aaKnown RBP11.59□□□□□ -0.55
SCAF11-208ENST00000546534 MS4A8Q9BY19 250 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 PLAC1Q9HBJ0 212 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 PPANQ9NQ55 473 aaKnown RBP11.59□□□□□ -0.55
SCAF11-208ENST00000546534 DNAJC11Q9NVH1 559 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 ZNF226Q9NYT6 803 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 CTNNAL1Q9UBT7 734 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 PACSIN3Q9UKS6 424 aa11.59□□□□□ -0.55
SCAF11-208ENST00000546534 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 C2orf92A0A1B0GVN3 265 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 FAM187AA6NFU0 413 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 WASHC1A8K0Z3 465 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 CAPN14A8MX76 684 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 H0Y3Z8 333 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 SAP18O00422 153 aaKnown RBP11.58□□□□□ -0.56
SCAF11-208ENST00000546534 PRKRAO75569 313 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms