RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PIGAP37287 484 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 RPS6KA2Q15349 733 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 NTRK2Q16620 822 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 GGTA1PQ4G0N0 100 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 CDH24Q86UP0 819 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 TP53INP1Q96A56 240 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 PHF21BQ96EK2 531 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 ZNF597Q96LX8 424 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 FMO2Q99518 471 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 TTYH2Q9BSA4 534 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 DOHHQ9BU89 302 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 NTMT1Q9BV86 223 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 NMRK1Q9NWW6 199 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 XPR1Q9UBH6 696 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 PCTPQ9UKL6 214 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 HRH3Q9Y5N1 445 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 LIPGQ9Y5X9 500 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 PHF3Q92576 2039 aaKnown RBP12.09□□□□□ -0.47
RTN3-213ENST00000543552 ANKRD33BA6NCL7 494 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 NKX2-6A6NCS4 301 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 GOLGA6L10A6NI86 522 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 OR7A17O14581 309 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 CDH16O75309 829 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 TOXO94900 526 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 OTCP00480 354 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 MAGEA12P43365 314 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 ZFP36L2P47974 494 aaKnown RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 NEK2P51955 445 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 MAPK12P53778 367 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 TFF3Q07654 80 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 CCNYL2Q5T2Q4 361 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 C1orf185Q5T7R7 199 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 PRAMEF20Q5VT98 475 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 TMEM198Q66K66 360 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 DGAT2L6Q6ZPD8 337 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 CCDC71Q8IV32 467 aaPredicted RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 CNPY4Q8N129 248 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 LRRC25Q8N386 305 aaPredicted RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 RPRMLQ8N4K4 120 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 OR7G1Q8NGA0 311 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 OR10G3Q8NGC4 313 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 OR4K14Q8NGD5 310 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 OR52B6Q8NGF0 335 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 JSRP1Q96MG2 331 aaPredicted RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 CDK15Q96Q40 435 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 SECISBP2Q96T21 854 aaKnown RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 PAFAH2Q99487 392 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 MRPL57Q9BQC6 102 aaKnown RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 MRPL46Q9H2W6 279 aaKnown RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 CDC42EP4Q9H3Q1 356 aaKnown RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 CXorf21Q9HAI6 301 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 ACKR4Q9NPB9 350 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 KCNN3Q9UGI6 736 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 ZNF180Q9UJW8 692 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 CFL2Q9Y281 166 aa12.08□□□□□ -0.48
RTN3-213ENST00000543552 CHCHD2Q9Y6H1 151 aaPredicted RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 TEP1Q99973 2627 aaKnown RBP12.08□□□□□ -0.48
RTN3-213ENST00000543552 SNX4O95219 450 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 GBAP04062 536 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 KLK1P06870 262 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 CELA3AP09093 270 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 GLI4P10075 376 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 KRT15P19012 456 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 GDF1P27539 372 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 PEX19P40855 299 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 TRAF3Q13114 568 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 SF3B4Q15427 424 aaKnown RBP eCLIP12.07□□□□□ -0.48
RTN3-213ENST00000543552 SLC25A35Q3KQZ1 300 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 GLE1Q53GS7 698 aaKnown RBP12.07□□□□□ -0.48
RTN3-213ENST00000543552 LGSNQ5TDP6 509 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 LYPD8Q6UX82 237 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 MILR1Q7Z6M3 343 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 DMRTC2Q8IXT2 367 aaPredicted RBP12.07□□□□□ -0.48
RTN3-213ENST00000543552 PLD6Q8N2A8 252 aaKnown RBP12.07□□□□□ -0.48
RTN3-213ENST00000543552 C17orf47Q8NEP4 570 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 NEIL3Q8TAT5 605 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 TRPC4APQ8TEL6 797 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 IFT81Q8WYA0 676 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 DIO2Q92813 273 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 LRRC46Q96FV0 321 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 C16orf45Q96MC5 204 aaPredicted RBP12.07□□□□□ -0.48
RTN3-213ENST00000543552 ZNF559Q9BR84 538 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 UCK2Q9BZX2 261 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 BRF2Q9HAW0 419 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 SEMA4BQ9NPR2 832 aaPredicted RBP12.07□□□□□ -0.48
RTN3-213ENST00000543552 NPDC1Q9NQX5 325 aaPredicted RBP12.07□□□□□ -0.48
RTN3-213ENST00000543552 CNOT11Q9UKZ1 510 aaKnown RBP12.07□□□□□ -0.48
RTN3-213ENST00000543552 PSME2Q9UL46 239 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 SNX6Q9UNH7 406 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 FAM215AQ9Y5M1 114 aa12.07□□□□□ -0.48
RTN3-213ENST00000543552 A0A087WUV0 522 aaPredicted RBP12.06□□□□□ -0.48
RTN3-213ENST00000543552 C1orf226A1L170 272 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 LRRC3CA6NJW4 275 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 PGRMC2O15173 223 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 CPMP14384 443 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 PORP16435 677 aaPredicted RBP12.06□□□□□ -0.48
RTN3-213ENST00000543552 NT5EP21589 574 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 SSTR4P31391 388 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 DEKP35659 375 aaKnown RBP12.06□□□□□ -0.48
RTN3-213ENST00000543552 MASP1P48740 699 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms