RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ERVK-6Q9BXR3 956 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 GSX2Q9BZM3 304 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ACBD3Q9H3P7 528 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 RPF2Q9H7B2 306 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 UBTD1Q9HAC8 227 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 MS4A12Q9NXJ0 267 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ZNF226Q9NYT6 803 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 SLC17A6Q9P2U8 582 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 CTNNAL1Q9UBT7 734 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 ERVK-19Q9WJR5 959 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 PPP2R2CQ9Y2T4 447 aa10.6□□□□□ -0.71
CLSTN3-209ENST00000539982 CHD3Q12873 2000 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 C2orf92A0A1B0GVN3 265 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 RTCAO00442 366 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 SIAH2O43255 324 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 GGT5P36269 586 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 CASP3P42574 277 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PTH2RP49190 550 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PCYT1AP49585 367 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 RPP38P78345 283 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PCDH1Q08174 1060 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 SLAMF1Q13291 335 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 LAPTM5Q13571 262 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 HIST2H2ACQ16777 129 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 SPRED3Q2MJR0 410 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 TIGD3Q6B0B8 471 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 HIST2H2AA3Q6FI13 130 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 FRA10AC1Q70Z53 315 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 ADGRE4PQ86SQ3 457 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 ADAMTSL2Q86TH1 951 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PPIL6Q8IXY8 311 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 ZNF441Q8N8Z8 693 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 RIT1Q92963 219 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 MAGOHBQ96A72 148 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PIK3IP1Q96FE7 263 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 TMEM41AQ96HV5 264 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 VPS39Q96JC1 886 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 KRT12Q99456 494 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PELOQ9BRX2 385 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 MS4A8Q9BY19 250 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PHACTR1Q9C0D0 580 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PPANQ9NQ55 473 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 SNX15Q9NRS6 342 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 DNAJC11Q9NVH1 559 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 TEX10Q9NXF1 929 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 WWOXQ9NZC7 414 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 PACSIN3Q9UKS6 424 aa10.59□□□□□ -0.71
CLSTN3-209ENST00000539982 NCF1BA6NI72 391 aaPredicted RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 NCF1CA8MVU1 366 aaPredicted RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 TAPBPO15533 448 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 CDH16O75309 829 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 NCF1P14598 390 aaPredicted RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 PAX1P15863 534 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 CD22P20273 847 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 CRYGSP22914 178 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 PTPN6P29350 595 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 TLX1P31314 330 aaPredicted RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 CXCR5P32302 372 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 GCKP35557 465 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 FAM27E3Q08E93 113 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 TSNQ15631 228 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 PAGE2BQ5JRK9 111 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 OR4C11Q6IEV9 310 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 HMBOX1Q6NT76 420 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 SCIMPQ6UWF3 145 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 YRDCQ86U90 279 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 GPR180Q86V85 440 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 PHC2Q8IXK0 858 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 TCAIMQ8N3R3 496 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 FAM83FQ8NEG4 500 aaPredicted RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 OR1J4Q8NGS1 313 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 ZNF473Q8WTR7 871 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 ANKRD49Q8WVL7 239 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 CNOT10Q9H9A5 744 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 KLHL28Q9NXS3 571 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 DSCAMO60469 2012 aa10.58□□□□□ -0.72
CLSTN3-209ENST00000539982 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 H0Y3Z8 333 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 GNB5O14775 395 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 MSTNO14793 375 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 SNPHO15079 494 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 OR10H2O60403 315 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 BANF1O75531 89 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 STK16O75716 305 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 TNFSF13O75888 250 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 GPR75O95800 540 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 TGFB1P01137 390 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 CLPSP04118 112 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 C8BP07358 591 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 CHMP24386 653 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 GALNSP34059 522 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 CPOXP36551 454 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 CASP2P42575 452 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 SSR2P43308 183 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 TMED10P49755 219 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 NRG3P56975 720 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 SRYQ05066 204 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 SETDB1Q15047 1291 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 TGFBIQ15582 683 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 TBCCQ15814 346 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms