RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 IPPKQ9H8X2 491 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 CSNK1G1Q9HCP0 422 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 FGF20Q9NP95 211 aaPredicted RBP6.37□□□□□ -1.39
USP28-207ENST00000538475 CRTAC1Q9NQ79 661 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 ASB6Q9NWX5 421 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 SDHAF2Q9NX18 166 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 NLKQ9UBE8 527 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 AASSQ9UDR5 926 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 FTSJ1Q9UET6 329 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 EIF2B4Q9UI10 523 aaKnown RBP6.37□□□□□ -1.39
USP28-207ENST00000538475 POMT2Q9UKY4 750 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 MGAT4BQ9UQ53 548 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 DHRS7Q9Y394 339 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 EXOSC1Q9Y3B2 195 aaKnown RBP6.37□□□□□ -1.39
USP28-207ENST00000538475 ACTL7AQ9Y615 435 aa6.37□□□□□ -1.39
USP28-207ENST00000538475 DENND4AQ7Z401 1863 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PLXNA4Q9HCM2 1894 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 TNS1Q9HBL0 1735 aaKnown RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 A0A0A6YYJ9 748 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 A0A1B0GTL3 188 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SLC12A8A0AV02 714 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 NPEPPSL1A6NEC2 478 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 YJEFN3A6XGL0 299 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 MAGEB17A8MXT2 336 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PRR33A8MZF0 331 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 F8W036 122 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 F8W810 466 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 I6L893 689 aaPredicted RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 AIPO00170 330 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ARVCFO00192 962 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 CDC7O00311 574 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 IRAK2O43187 625 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 CHST10O43529 356 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SIGLEC6O43699 453 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 AKAP8O43823 692 aaKnown RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 RAD1O60671 282 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 FGF18O76093 207 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 AP2A2O94973 939 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 RAB36O95755 333 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 HLA-DPB1P04440 258 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PROS1P07225 676 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 MMP2P08253 660 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 RHCEP18577 417 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 RBMS1P29558 406 aaKnown RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 LCN1P31025 176 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 EVI2BP34910 448 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 GSTM5P46439 218 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ASMTP46597 345 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 CAPZA2P47755 286 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 AGTR2P50052 363 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ZNF140P52738 457 aaPredicted RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 WNT4P56705 351 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 GPR85P60893 370 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SSTP61278 116 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 WDR5P61964 334 aaKnown RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 POLR2GP62487 172 aaKnown RBP eCLIP6.36□□□□□ -1.39
USP28-207ENST00000538475 HOXC5Q00444 222 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ZNF91Q05481 1191 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ZP2Q05996 745 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 CACNB2Q08289 660 aaPredicted RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 PPP1R8Q12972 351 aaKnown RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 RPA4Q13156 261 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 FGFBP1Q14512 234 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PTGR1Q14914 329 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ABRAXAS2Q15018 415 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PTGES3Q15185 160 aaKnown RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 FCN2Q15485 313 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 TAF1AQ15573 450 aaPredicted RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 TRAM1Q15629 374 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ZNF284Q2VY69 593 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 LGALSLQ3ZCW2 172 aaPredicted RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 GPR33Q49SQ1 333 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 CCDC157Q569K6 752 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PABPC1L2AQ5JQF8 200 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 HECTD3Q5T447 861 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SLC22A10Q63ZE4 541 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 C12orf73Q69YU5 71 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 FAM109BQ6ICB4 259 aaPredicted RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 FAM198BQ6UWH4 519 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 CD300LDQ6UXZ3 194 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 C3P1Q6ZMU1 363 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PAQR9Q6ZVX9 377 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 HTR3DQ70Z44 454 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 CAMKMTQ7Z624 323 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PTOV1Q86YD1 416 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SLITRK4Q8IW52 837 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 LGI4Q8N135 537 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 LRRC71Q8N4P6 559 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SPICQ8N5J4 248 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 MS4A15Q8N5U1 240 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SLC5A8Q8N695 610 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ZNF655Q8N720 491 aaPredicted RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 FAM71CQ8NEG0 241 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 ARRDC2Q8TBH0 407 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SCARB1Q8WTV0 552 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 GEMIN6Q8WXD5 167 aaKnown RBP6.36□□□□□ -1.39
USP28-207ENST00000538475 FBXW5Q969U6 566 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 RFT1Q96AA3 541 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 PHF21AQ96BD5 680 aa6.36□□□□□ -1.39
USP28-207ENST00000538475 SMARCD1Q96GM5 515 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms