RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 NHSQ6T4R5 1651 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 TGFB1P01137 390 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 ALPPP05187 535 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 POLR2CP19387 275 aaPredicted RBP10.75□□□□□ -0.69
TCOF1-211ENST00000513346 S100A2P29034 98 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 DAPP51397 102 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 BLKP51451 505 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 WNT4P56705 351 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 SLC35A2P78381 396 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 CD300CQ08708 224 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 TRAM1Q15629 374 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 PYHIN1Q6K0P9 492 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 TMCO2Q7Z6W1 182 aaPredicted RBP10.75□□□□□ -0.69
TCOF1-211ENST00000513346 NECTIN4Q96NY8 510 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 CACNG2Q9Y698 323 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 SCN2BO60939 215 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 MTX2O75431 263 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 OSMP13725 252 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 NPR2P20594 1047 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 ITPKBP27987 946 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 MLLT1Q03111 559 aaPredicted RBP10.75□□□□□ -0.69
TCOF1-211ENST00000513346 PCBP2Q15366 365 aaKnown RBP eCLIP10.75□□□□□ -0.69
TCOF1-211ENST00000513346 MINDY4Q4G0A6 757 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 SERPINA11Q86U17 422 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 GRAMD2AQ8IUY3 354 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 LAX1Q8IWV1 398 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 UMODL1-AS1Q8N2C9 162 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 DCAF4L2Q8NA75 395 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 TSTD1Q8NFU3 115 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 OSTF1Q92882 214 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 TESCQ96BS2 214 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 SECISBP2Q96T21 854 aaKnown RBP10.75□□□□□ -0.69
TCOF1-211ENST00000513346 SLC38A3Q99624 504 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 C11orf54Q9H0W9 315 aaPredicted RBP10.75□□□□□ -0.69
TCOF1-211ENST00000513346 SRMSQ9H3Y6 488 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 OSER1Q9NX31 292 aa10.75□□□□□ -0.69
TCOF1-211ENST00000513346 KRBOX1C9JBD0 128 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 PRAMEF11O60813 436 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CYP17A1P05093 508 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 RAB3BP20337 219 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 SSTR2P30874 369 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 ST3GAL3Q11203 375 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CHRNA6Q15825 494 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 FLYWCH1Q4VC44 716 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CES4AQ5XG92 561 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 NXPE1Q8N323 547 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 ZFAND1Q8TCF1 268 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 TSEN15Q8WW01 171 aaKnown RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 UBXN10Q96LJ8 280 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 AMBRA1Q9C0C7 1298 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 PCBD2Q9H0N5 130 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CHMP1AQ9HD42 196 aaPredicted RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 GPN3Q9UHW5 284 aaPredicted RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 SLX4Q8IY92 1834 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CLDN4O14493 209 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 ARHGAP33O14559 1287 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 SLC22A5O76082 557 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 TGM6O95932 706 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 TFP02787 698 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 ACP5P13686 325 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 DRD5P21918 477 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 GRIN2CQ14957 1233 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 ZMYND11Q15326 602 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 SEC23BQ15437 767 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 USF2Q15853 346 aaPredicted RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 OR9Q2Q8NGE9 314 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 OR51G2Q8NGK0 314 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 TRIB3Q96RU7 358 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 ATOH8Q96SQ7 321 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 LGR4Q9BXB1 951 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 SMG9Q9H0W8 520 aaKnown RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 NDUFAF4Q9P032 175 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 ENPP4Q9Y6X5 453 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 TOGARAM1Q9Y4F4 1720 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 DDX60Q8IY21 1712 aaKnown RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 LEFTY2O00292 366 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 FABP7O15540 132 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 C1QBP02746 253 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 NT5EP21589 574 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 PITPNBP48739 271 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 SLBPQ14493 270 aaKnown RBP eCLIP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CTU2Q2VPK5 515 aaKnown RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 SLC35F1Q5T1Q4 408 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 RPTNQ6XPR3 784 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CEACAM19Q7Z692 300 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 BTLAQ7Z6A9 289 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 THOC6Q86W42 341 aaKnown RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 GPALPP1Q8IXQ4 340 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 DNASE1L2Q92874 299 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 THAP7Q9BT49 309 aaPredicted RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 REEP4Q9H6H4 257 aa10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CARS2Q9HA77 564 aaKnown RBP10.74□□□□□ -0.69
TCOF1-211ENST00000513346 CLDN7O95471 211 aa10.73□□□□□ -0.69
TCOF1-211ENST00000513346 EN2P19622 333 aaPredicted RBP10.73□□□□□ -0.69
TCOF1-211ENST00000513346 DDCP20711 480 aa10.73□□□□□ -0.69
TCOF1-211ENST00000513346 SELENOWP63302 87 aa10.73□□□□□ -0.69
TCOF1-211ENST00000513346 TAF13Q15543 124 aa10.73□□□□□ -0.69
TCOF1-211ENST00000513346 METAP1DQ6UB28 335 aaPredicted RBP10.73□□□□□ -0.69
TCOF1-211ENST00000513346 DNAJC5GQ8N7S2 189 aa10.73□□□□□ -0.69
TCOF1-211ENST00000513346 GNPDA2Q8TDQ7 276 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms