RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 LMAN2LQ9H0V9 348 aa15.24■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CUEDC1Q9NWM3 386 aaPredicted RBP15.24■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DNAJC27Q9NZQ0 273 aa15.24■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 POU2F3Q9UKI9 436 aa15.24■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TMCC3Q9ULS5 477 aa15.24■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MGAT4BQ9UQ53 548 aa15.24■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 COL4A3Q01955 1670 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CSO75390 466 aaKnown RBP15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ERGP11308 486 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 FOSL2P15408 326 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 KELP23276 732 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CSTF2P33240 577 aaKnown RBP eCLIP15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ST8SIA6P61647 398 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TFF2Q03403 129 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DCST1Q5T197 706 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 C9orf64Q5T6V5 341 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CCBE1Q6UXH8 406 aaPredicted RBP15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PDZD3Q86UT5 571 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CACTIN-AS1Q8N1I8 211 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 NUAK2Q9H093 628 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 FBXL12Q9NXK8 326 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 EHD3Q9NZN3 535 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SLC23A2Q9UGH3 650 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TAC3Q9UHF0 121 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ACAD8Q9UKU7 415 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 FAAHO00519 579 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 LZTS3O60299 673 aaPredicted RBP15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 HSPB3Q12988 150 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ADAM15Q13444 863 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PGBD2Q6P3X8 592 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 BCDIN3DQ7Z5W3 292 aaKnown RBP15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 COMTD1Q86VU5 262 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PLA2G15Q8NCC3 412 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 VANGL1Q8TAA9 524 aaPredicted RBP15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 WFIKKN2Q8TEU8 576 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CHAC2Q8WUX2 184 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MED30Q96HR3 178 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ZNF354BQ96LW1 612 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CNPPD1Q9BV87 410 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 BARHL1Q9BZE3 327 aa15.23■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ATG2BQ96BY7 2078 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PNMA8CA0A1B0GUJ8 204 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 HEPACAM2A8MVW5 462 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ANHXE9PGG2 379 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CAPN5O15484 640 aaPredicted RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 VEGFDO43915 354 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SSX4O60224 188 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TMPRSS11DO60235 418 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 OR10H3O60404 316 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 H1F0P07305 194 aaKnown RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CHRNB1P11230 501 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ADH5P11766 374 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ADRB3P13945 408 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 RPS19P39019 145 aaKnown RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SOX3P41225 446 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 NCF4Q15080 339 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MEDAGQ5VYS4 303 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ANKRD54Q6NXT1 300 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DEF8Q6ZN54 512 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SPATC1Q76KD6 591 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 AKAP14Q86UN6 197 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 C17orf64Q86WR6 236 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MMAAQ8IVH4 418 aaKnown RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TMIEQ8NEW7 156 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 KLHL6Q8WZ60 621 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SMPDL3AQ92484 453 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TRMT61AQ96FX7 289 aaKnown RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TMEM80Q96HE8 168 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ASPNQ9BXN1 380 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MVB12BQ9H7P6 319 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PELI2Q9HAT8 420 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DYRK4Q9NR20 520 aa15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CRNNQ9UBG3 495 aaPredicted RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 WBP11Q9Y2W2 641 aaKnown RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MRPS23Q9Y3D9 190 aaKnown RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MUC22E2RYF6 1773 aaPredicted RBP15.22■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 FEZF1A0PJY2 475 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 LOC110117498-PIK3R3F6TDL0 507 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TNFSF8P32971 234 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 VIPR2P41587 438 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CASP3P42574 277 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CRYBB2P43320 205 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 XKP51811 444 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SPANXN2Q5MJ10 180 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 WDR45BQ5MNZ6 344 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 FAM92BQ6ZTR7 304 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DCUN1D3Q8IWE4 304 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 AMER3Q8N944 861 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SLC7A13Q8TCU3 470 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PIK3R3Q92569 461 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TFGQ92734 400 aaPredicted RBP15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 EXOSC8Q96B26 276 aaKnown RBP15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 MENTQ9BUN1 341 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 NEUROD4Q9HD90 331 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 WASH6PQ9NQA3 447 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 A4GNTQ9UNA3 340 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SLC27A6Q9Y2P4 619 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 DENND4AQ7Z401 1863 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 A8MU76 341 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CENPBD1B2RD01 187 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms