RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 BHLHE41Q9C0J9 482 aaPredicted RBP11.1□□□□□ -0.63
CUX1-210ENST00000497815 ING2Q9H160 280 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 ANKRA2Q9H9E1 313 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 CXorf21Q9HAI6 301 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 ATP13A2Q9NQ11 1180 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 MAT2BQ9NZL9 334 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 ZIM2Q9NZV7 527 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 CCDC167Q9P0B6 97 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 KCNMB2Q9Y691 235 aa11.1□□□□□ -0.63
CUX1-210ENST00000497815 IGF2RP11717 2491 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 TRBV11-1A0A0K0K1C0 115 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 A8MUI8 341 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 CFLARO15519 480 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 DDAH2O95865 285 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 C6orf47O95873 294 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 ABCB1P08183 1280 aaPredicted RBP11.09□□□□□ -0.63
CUX1-210ENST00000497815 ITGAMP11215 1152 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 CD1EP15812 388 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 PCSK2P16519 638 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 ITGA3P26006 1051 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 SSTR4P31391 388 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 GPC1P35052 558 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 ATP4BP51164 291 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 POLR2JP52435 117 aaKnown RBP11.09□□□□□ -0.63
CUX1-210ENST00000497815 SRSF11Q05519 484 aaKnown RBP11.09□□□□□ -0.63
CUX1-210ENST00000497815 MGAT2Q10469 447 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 AIMP2Q13155 320 aaKnown RBP11.09□□□□□ -0.63
CUX1-210ENST00000497815 EXOSC7Q15024 291 aaKnown RBP11.09□□□□□ -0.63
CUX1-210ENST00000497815 TERF2Q15554 542 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 CEBPEQ15744 281 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 PRICKLE4Q2TBC4 344 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 COL28A1Q2UY09 1125 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 TIGD2Q4W5G0 525 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 ZNF628Q5EBL2 1059 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 PLAG1Q6DJT9 500 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 BORAQ6PGQ7 559 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 TMEM107Q6UX40 140 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 CAMKMTQ7Z624 323 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 ANKRD46Q86W74 232 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 CLECL1Q8IZS7 167 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 VWA5B2Q8N398 1253 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 GLB1L3Q8NCI6 653 aaPredicted RBP11.09□□□□□ -0.63
CUX1-210ENST00000497815 MORN4Q8NDC4 146 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 SIMC1Q8NDZ2 872 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 ZFP28Q8NHY6 868 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 EXTL1Q92935 676 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 SENP5Q96HI0 755 aaPredicted RBP11.09□□□□□ -0.63
CUX1-210ENST00000497815 FBXL20Q96IG2 436 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 NUDT9Q9BW91 350 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 ZNF385DQ9H6B1 395 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 COPS7AQ9UBW8 275 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 BCAP29Q9UHQ4 241 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 CELSR3Q9NYQ7 3312 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 APC2O95996 2303 aa11.09□□□□□ -0.63
CUX1-210ENST00000497815 FAM234BA2RU67 622 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 FCHO1O14526 889 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 CPSF4O95639 269 aaKnown RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 FAM107AO95990 144 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 SERPINA7P05543 415 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 PGRP06401 933 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 ICAM2P13598 275 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 GALNSP34059 522 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 MC3RP41968 323 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 FRKP42685 505 aaPredicted RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 ZFP36L2P47974 494 aaKnown RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 CDK9P50750 372 aaKnown RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 WNT3P56703 355 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 KCNK10P57789 538 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 PHC1P78364 1004 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 TBR1Q16650 682 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 SPRED3Q2MJR0 410 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 DPY19L1Q2PZI1 675 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 TRMT12Q53H54 448 aaKnown RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 ANXA8L1Q5VT79 327 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 IRAK1BP1Q5VVH5 260 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 GK5Q6ZS86 529 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 SZRD1Q7Z422 152 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 PIGWQ7Z7B1 504 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 GALNT16Q8N428 558 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 SIRT6Q8N6T7 355 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 APCDD1LQ8NCL9 501 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 OR7G2Q8NG99 324 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 OR8J2Q8NGG1 315 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 OR4A15Q8NGL6 344 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 OR1N1Q8NGS0 311 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 M1APQ8TC57 530 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 BRIX1Q8TDN6 353 aaKnown RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 ZNF721Q8TF20 911 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 THAP3Q8WTV1 239 aaPredicted RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 APOBEC4Q8WW27 367 aaKnown RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 VPS33AQ96AX1 596 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 VMP1Q96GC9 406 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 ART5Q96L15 291 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 OR52E6Q96RD3 313 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 NMUR2Q9GZQ4 415 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 MMP25Q9NPA2 562 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 SAR1AQ9NR31 198 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 ACSS1Q9NUB1 689 aaPredicted RBP11.08□□□□□ -0.64
CUX1-210ENST00000497815 ARMCX1Q9P291 453 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 ZNF223Q9UK11 482 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms