RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GPR34Q9UPC5 381 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 HSPE1-MOB4S4R3N1 261 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 C17orf113A0A1B0GUU1 675 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 H3BQ06 376 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 RB1P06400 928 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 PCSK2P16519 638 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 SPDYE7PQ495Y7 208 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 LRRTM4Q86VH4 590 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 IL17RDQ8NFM7 739 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 SLC38A5Q8WUX1 472 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF514Q96K75 400 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 SLC6A17Q9H1V8 727 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 TVP23BQ9NYZ1 205 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 TBC1D24Q9ULP9 559 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 WBP11Q9Y2W2 641 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 OR52A4PA6NMU1 304 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 FFAR1O14842 300 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 PLD2O14939 933 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 VEGFDO43915 354 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 CCNB2O95067 398 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 ARAFP10398 606 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SOX6P35712 828 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 OPRD1P41143 372 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 HOXC5Q00444 222 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SEC23BQ15437 767 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 LCTLQ6UWM7 567 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SMARCD2Q92925 531 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 TMEM19Q96HH6 336 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 TXNDC15Q96J42 360 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 FZD3Q9NPG1 666 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 NUFIP1Q9UHK0 495 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 A0A1W2PP55 124 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SEMA7AO75326 666 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 BSGP35613 385 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SEC13P55735 322 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF750Q32MQ0 723 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 TMEM52BQ4KMG9 183 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SNAP47Q5SQN1 464 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 PAMR1Q6UXH9 720 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF765Q7L2R6 523 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 MINDY2Q8NBR6 621 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 OR5K2Q8NHB8 316 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 COX14Q96I36 57 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 C12orf66Q96MD2 445 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 FERD3LQ96RJ6 166 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 C17orf62Q9BQA9 187 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SLC30A2Q9BRI3 323 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 TMEM38AQ9H6F2 299 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 SP140LQ9H930 580 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 PAQR5Q9NXK6 330 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF221Q9UK13 617 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 GPR52Q9Y2T5 361 aa15.65■□□□□ 0.1
CCDC88B-210ENST00000494566 CDRT1O95170 752 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 XCR1P46094 333 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 PCBP3P57721 371 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 TBRG1Q3YBR2 411 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 GEMIN6Q8WXD5 167 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 PIP5K1AQ99755 562 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 MS4A8Q9BY19 250 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 SPATA7Q9P0W8 599 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 IL20RAQ9UHF4 553 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 MAPRE3Q9UPY8 281 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 ANGPT4Q9Y264 503 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 A0A1W2PPV9 198 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 A0A1W2PQ09 198 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 A0A1W2PS29 197 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 SYNDIG1LA6NDD5 238 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 FAM47E-STBD1D6RA91 191 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 DDCP20711 480 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 MAT2AP31153 395 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 RNF144AP50876 292 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 PRKAG1P54619 331 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 TUBA1BP68363 451 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 C22orf42Q6IC83 251 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 UNC5DQ6UXZ4 953 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 TUBA1AQ71U36 451 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 MENTQ9BUN1 341 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 PLA2G2FQ9BZM2 168 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 MUC22E2RYF6 1773 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 C5orf58C9J3I9 102 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 C1QTNF3-AMACRE9PGA6 284 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 SMLR1H3BR10 107 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 PDPK1O15530 556 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 SLC35G4P0C7Q5 338 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 CD72P21854 359 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 GJA4P35212 333 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 DEFA1P59665 94 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 DEFA3P59666 94 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 CDC42P60953 191 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 PIN1Q13526 163 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 FGL2Q14314 439 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 INSL4Q14641 139 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 MLF2Q15773 248 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 BCL2A1Q16548 175 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 ZNF630Q2M218 657 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 OR2G6Q5TZ20 316 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 FAM131AQ6UXB0 335 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 B3GLCTQ6Y288 498 aa15.64■□□□□ 0.09
CCDC88B-210ENST00000494566 LACC1Q8IV20 430 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms