RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 C17orf105B2RV13 164 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 TGFBR3LH3BV60 316 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 K7ENP7 123 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 PDPK1O15530 556 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 TBX19O60806 448 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 CCDC22O60826 627 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 SEC24DO94855 1032 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 S100A3P33764 101 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 GALNSP34059 522 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 PGDP52209 483 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 NCBP2P52298 156 aaKnown RBP eCLIP9.62□□□□□ -0.87
SKA1-204ENST00000488454 C21orf58P58505 322 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 UFM1P61960 85 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 CXADRP78310 365 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 IGLV3-21P80748 117 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 SQLEQ14534 574 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 DPY19L1Q2PZI1 675 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 ZNF750Q32MQ0 723 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 RNFT1Q5M7Z0 435 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 ATP1A1-AS1Q5TC04 95 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 ANXA8L1Q5VT79 327 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 IRAK1BP1Q5VVH5 260 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 FAM180BQ6P0A1 224 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 INO80CQ6PI98 192 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 TMEM102Q8N9M5 508 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 OR7A2PQ8NGA2 310 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 OR14A16Q8NHC5 309 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 ZFP28Q8NHY6 868 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 COQ8BQ96D53 544 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 CNRIP1Q96F85 164 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 ZBED6CLQ96FA7 236 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 ZNF764Q96H86 408 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 ART5Q96L15 291 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 ZNF681Q96N22 645 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 CCT8L2Q96SF2 557 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 BHLHE41Q9C0J9 482 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 ZNF160Q9HCG1 818 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 SDR39U1Q9NRG7 319 aaPredicted RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 PCDHGB4Q9UN71 923 aa9.62□□□□□ -0.87
SKA1-204ENST00000488454 URB1O60287 2271 aaKnown RBP9.62□□□□□ -0.87
SKA1-204ENST00000488454 A0A1W2PRB8 838 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 SAGE2PA6NJ88 616 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 ARGFXA6NJG6 315 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 MYO1GB0I1T2 1018 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 CFLARO15519 480 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 SNX3O60493 162 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 ATP1B1P05026 303 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 IL6P05231 212 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 LAMP1P11279 417 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 COX6A1P12074 109 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 KIR3DL1P43629 444 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 ATP4BP51164 291 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 POLR2JP52435 117 aaKnown RBP9.61□□□□□ -0.87
SKA1-204ENST00000488454 EFNA3P52797 238 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 KCNK10P57789 538 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 AIMP2Q13155 320 aaKnown RBP9.61□□□□□ -0.87
SKA1-204ENST00000488454 PDE7AQ13946 482 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 ZNF267Q14586 743 aaPredicted RBP9.61□□□□□ -0.87
SKA1-204ENST00000488454 PCOLCEQ15113 449 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 TERF2Q15554 542 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 BTBD16Q32M84 506 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 DCAF10Q5QP82 559 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 PAOXQ6QHF9 649 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 GALNT12Q8IXK2 581 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 RIMKLAQ8IXN7 391 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 KBTBD2Q8IY47 623 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 MORN4Q8NDC4 146 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 M1APQ8TC57 530 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 PTPMT1Q8WUK0 201 aaPredicted RBP9.61□□□□□ -0.87
SKA1-204ENST00000488454 C10orf82Q8WW14 230 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 TESCQ96BS2 214 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 SENP5Q96HI0 755 aaPredicted RBP9.61□□□□□ -0.87
SKA1-204ENST00000488454 CNTNAP3BQ96NU0 1288 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 DUSP26Q9BV47 211 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 CNPPD1Q9BV87 410 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 CNTNAP3Q9BZ76 1288 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 OR8D2Q9GZM6 311 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 ING2Q9H160 280 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 CLMPQ9H6B4 373 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 ACSS1Q9NUB1 689 aaPredicted RBP9.61□□□□□ -0.87
SKA1-204ENST00000488454 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.61□□□□□ -0.87
SKA1-204ENST00000488454 TMEM45AQ9NWC5 275 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 COPS7AQ9UBW8 275 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 CLDN16Q9Y5I7 305 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 COPG1Q9Y678 874 aaKnown RBP9.61□□□□□ -0.87
SKA1-204ENST00000488454 AKAP13Q12802 2813 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 CEP295Q9C0D2 2601 aa9.61□□□□□ -0.87
SKA1-204ENST00000488454 PRSS51A0A1B0GVH4 220 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 A0A1W2PQ72 361 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 FAM234BA2RU67 622 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 CDK2AP1O14519 115 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 ANKRD28O15084 1053 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 SHOX2O60902 331 aaPredicted RBP9.6□□□□□ -0.87
SKA1-204ENST00000488454 BCAS2O75934 225 aaPredicted RBP9.6□□□□□ -0.87
SKA1-204ENST00000488454 SLITRK5O94991 958 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 FAM107AO95990 144 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 GPX3P22352 226 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 ITGA3P26006 1051 aa9.6□□□□□ -0.87
SKA1-204ENST00000488454 MRPL19P49406 292 aaKnown RBP9.6□□□□□ -0.87
SKA1-204ENST00000488454 CCL11P51671 97 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms