RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 OR3A3P47888 321 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 CRISP3P54108 245 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 SLC7A9P82251 487 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 GALK2Q01415 458 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 GINS1Q14691 196 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 ZNF385BQ569K4 471 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 ATAT1Q5SQI0 421 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 C22orf42Q6IC83 251 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TYW3Q6IPR3 259 aaKnown RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 CD200R1LQ6Q8B3 271 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 LCTLQ6UWM7 567 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 DEF8Q6ZN54 512 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 VRK3Q8IV63 474 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 GHDCQ8N2G8 530 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 VANGL1Q8TAA9 524 aaPredicted RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 GLYATL1Q969I3 302 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 ZNF689Q96CS4 500 aaPredicted RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 RADILQ96JH8 1075 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 PRRC1Q96M27 445 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 DHRS9Q9BPW9 319 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 AIF1LQ9BQI0 150 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TMEM43Q9BTV4 400 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 FAIM2Q9BWQ8 316 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TRIM39Q9HCM9 518 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 EMC7Q9NPA0 242 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TAS2R16Q9NYV7 291 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TESQ9UGI8 421 aaKnown RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 TRBV4-1A0A0J9YWV2 114 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 A0A0U1RQS6 177 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 A0A1B0GVI7 797 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TSPAN11A1L157 253 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 UPK3BL1B0FP48 263 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 UPK3BL2E5RIL1 263 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 INMT-MINDY4F8WBC2 141 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 J3KTA2 159 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TLX2O43763 284 aaPredicted RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 SLC28A2O43868 658 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 LZTS3O60299 673 aaPredicted RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 SLC16A8O95907 504 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 URODP06132 367 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 HBQ1P09105 142 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 MTNR1AP48039 350 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 GIPRP48546 466 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TBPL1P62380 186 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 BTBD16Q32M84 506 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 SYT14P1Q58G82 188 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 ZNF57Q68EA5 555 aaPredicted RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 IDO2Q6ZQW0 420 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TCEAL8Q8IYN2 117 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 ELMOD2Q8IZ81 293 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 SMPDL3AQ92484 453 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 OSTF1Q92882 214 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 RNFT2Q96EX2 444 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TMEM169Q96HH4 297 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 TMEM19Q96HH6 336 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 SLC35G5Q96KT7 338 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 LRR1Q96L50 414 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 ZNF582Q96NG8 517 aaPredicted RBP5.81□□□□□ -1.48
HERC4-209ENST00000473533 JAM3Q9BX67 310 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 ACTR6Q9GZN1 396 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.81□□□□□ -1.48
HERC4-209ENST00000473533 GPATCH2Q9NW75 528 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 KLHL28Q9NXS3 571 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 ALG5Q9Y673 324 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 PIKFYVEQ9Y2I7 2098 aa5.81□□□□□ -1.48
HERC4-209ENST00000473533 C17orf113A0A1B0GUU1 675 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 LINC00854A0A1B0GVQ3 168 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 A0A1W2PQ72 361 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TUBAL3A6NHL2 446 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SYT5O00445 386 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 IL3P08700 152 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 DRD2P14416 443 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TNNI3P19429 210 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 LHCGRP22888 699 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 KELP23276 732 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 F8A1P23610 371 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 NTSP30990 170 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 KIR2DL3P43628 341 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 MTNR1BP49286 362 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 EVX1P49640 407 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 MAPK12P53778 367 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TAS2R43P59537 309 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZXDBP98169 803 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 PITPNAQ00169 270 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CDK5Q00535 292 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 MXD1Q05195 221 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 RAB33AQ14088 237 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZXDCQ2QGD7 858 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 COL28A1Q2UY09 1125 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CCDC58Q4VC31 144 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 C1orf94Q6P1W5 598 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CNIH2Q6PI25 160 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TMIGD1Q6UXZ0 262 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 LRRC28Q86X40 367 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 IFNL1Q8IU54 200 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 GID4Q8IVV7 300 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ATP6V1C2Q8NEY4 427 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SUN3Q8TAQ9 357 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SFXN5Q8TD22 340 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms