RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	U2AF1L4	Q8WU68	220 aa	Known RBP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	RASL10A	Q92737	203 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	NTNG2	Q96CW9	530 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	COG3	Q96JB2	828 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	ACCS	Q96QU6	501 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	PSMB7	Q99436	277 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	COQ7	Q99807	217 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	C19orf43	Q9BQ61	176 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	CBWD1	Q9BRT8	395 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044		Q9HAA7	133 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	SLC25A19	Q9HC21	320 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	HPS4	Q9NQG7	708 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	COPS7A	Q9UBW8	275 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	CIDEB	Q9UHD4	219 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	ENTPD4	Q9Y227	616 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	SYNJ2	O15056	1496 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	RNF103-CHMP3	A0A140T963	221 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	CFAP73	A6NFT4	308 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	ARHGAP42	A6NI28	874 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SH2D1B	O14796	132 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	UBE4B	O95155	1302 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SYNGR4	O95473	234 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SEMA4F	O95754	770 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZMYM6	O95789	1325 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SLC4A1	P02730	911 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	HOXD4	P09016	255 aa	Predicted RBP	3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SPR	P35270	261 aa	Predicted RBP	3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SLC6A8	P48029	635 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	NLRP11	P59045	1033 aa	Known RBP	3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	RPS4X	P62701	263 aa	Known RBP	3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	EMC2	Q15006	297 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	PCK2	Q16822	640 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF528	Q3MIS6	628 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	PARP10	Q53GL7	1025 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	VWA2	Q5GFL6	755 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF772	Q68DY9	489 aa	Predicted RBP	3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	STEAP1B	Q6NZ63	245 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	FAM159A	Q6UWV7	190 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	MFSD7	Q6UXD7	560 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF841	Q6ZN19	808 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SLC47A2	Q86VL8	602 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	ELMOD2	Q8IZ81	293 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	HDDC3	Q8N4P3	179 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SAMD12	Q8N8I0	201 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	FLVCR1-AS1	Q8TAF5	88 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	TMEM37	Q8WXS4	190 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	TMEM45B	Q96B21	275 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SOST	Q9BQB4	213 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	LRRCC1	Q9C099	1032 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	XPO4	Q9C0E2	1151 aa	Known RBP	3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	ATG10	Q9H0Y0	220 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	DCTPP1	Q9H773	170 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	NDUFA13	Q9P0J0	144 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	LHX3	Q9UBR4	397 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	MGAT4A	Q9UM21	535 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	SLC6A5	Q9Y345	797 aa		3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	MRPL11	Q9Y3B7	192 aa	Known RBP	3.06	□□□□□ -1.92
PTCD3-209	ENST00000472044	AFF2	P51816	1311 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044		A0A0U1RRA0	63 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	ACOD1	A6NK06	481 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	RPL37AP8	A6NKH3	93 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	DUSP11	O75319	330 aa	Known RBP	3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	OR9G9	P0C7N8	305 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCDC192	P0DO97	292 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	GP9	P14770	177 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	IL4R	P24394	825 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	SFN	P31947	248 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	CLPP	Q16740	277 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZSWIM7	Q19AV6	140 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	HKDC1	Q2TB90	917 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	ANKRD55	Q3KP44	614 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCDC40	Q4G0X9	1142 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	UNC50	Q53HI1	259 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	CMPK2	Q5EBM0	449 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	EMB	Q6PCB8	327 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	CNST	Q6PJW8	725 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	BNIPL	Q7Z465	357 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	MYPOP	Q86VE0	399 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	LRRC49	Q8IUZ0	686 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	FGFRL1	Q8N441	504 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	NSMCE2	Q96MF7	247 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	CPXM1	Q96SM3	734 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	ST6GALNAC5	Q9BVH7	336 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	RBM24	Q9BX46	236 aa	Known RBP	3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	UBXN6	Q9BZV1	441 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	SIRPD	Q9H106	197 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	HSD3B7	Q9H2F3	369 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	LIME1	Q9H400	295 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	FAM124B	Q9H5Z6	455 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	STARD5	Q9NSY2	213 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	NINJ2	Q9NZG7	142 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	MIOX	Q9UGB7	285 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	KLHDC2	Q9Y2U9	406 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	FBXO7	Q9Y3I1	522 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	CPQ	Q9Y646	472 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	RALGAPA1	Q6GYQ0	2036 aa		3.05	□□□□□ -1.92
PTCD3-209	ENST00000472044	HCFC1	P51610	2035 aa		3.04	□□□□□ -1.92

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