RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 C3orf38Q5JPI3 329 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 BAIAP2L2Q6UXY1 529 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 PRRT2Q7Z6L0 340 aaPredicted RBP12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 NUP43Q8NFH3 380 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 OR56A1Q8NGH5 318 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 METTL2AQ96IZ6 378 aaKnown RBP12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 MS4A12Q9NXJ0 267 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 KCTD3Q9Y597 815 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 DOCK11Q5JSL3 2073 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 MATN2O00339 956 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 ARL6IP5O75915 188 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CELP19835 753 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 PHC1P78364 1004 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 EXOSC6Q5RKV6 272 aaKnown RBP12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 C22orf39Q6P5X5 142 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 GALNT6Q8NCL4 622 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RAD9AQ99638 391 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 ACTL8Q9H568 366 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TAS2R3Q9NYW6 316 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 DNAJB11Q9UBS4 358 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 ST14Q9Y5Y6 855 aa12.7□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TCRBV7S3A2A0A539 114 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 H3BNX3 289 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RNF225M0QZC1 329 aaPredicted RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CRYBA1P05813 215 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 AK4P27144 223 aaPredicted RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TMPRSS12Q86WS5 348 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 BADQ92934 168 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SCAMP4Q969E2 229 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 NAA11Q9BSU3 229 aaPredicted RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 COPZ2Q9P299 210 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SQORQ9Y6N5 450 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 OPN1LWP04000 364 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CX3CR1P49238 355 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 ZNF517Q6ZMY9 492 aaPredicted RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SAMD12Q8N8I0 201 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RHBDD1Q8TEB9 315 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 PYURFQ96I23 114 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 BTNL10A8MVZ5 291 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 H6PDO95479 791 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SMAD2Q15796 467 aaKnown RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 ZNF431Q8TF32 576 aaPredicted RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 DAZLQ92904 295 aaKnown RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 APOBEC3GQ9HC16 384 aaKnown RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 MYNNQ9NPC7 610 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 GSTM3P21266 225 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SLC11A1P49279 550 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 BTBD16Q32M84 506 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 KCTD13Q8WZ19 329 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 MRIQ9BWK5 157 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CPEB1Q9BZB8 566 aaKnown RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SRRDQ9UH36 339 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CCDC88AQ3V6T2 1871 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CACNA1BQ00975 2339 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 NIPAL1Q6NVV3 410 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 GRPEL2Q8TAA5 225 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RRNAD1Q96FB5 475 aaKnown RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 PIP5K1AQ99755 562 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CAPN5O15484 640 aaPredicted RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 VEGFDO43915 354 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 PET100P0DJ07 73 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SQSTM1Q13501 440 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RCAN2Q14206 197 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 LTC4SQ16873 150 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 NCEH1Q6PIU2 408 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CRELD2Q6UXH1 353 aaPredicted RBP12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TPRA1Q86W33 373 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 FCGR1BQ92637 280 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RSPRY1Q96DX4 576 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SUSD3Q96L08 255 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 KCNK12Q9HB15 430 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SPTA1P02549 2419 aa12.69□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 ASPAP45381 313 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SPANXN4Q5MJ08 99 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 HOXB13Q92826 284 aaPredicted RBP12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SLC6A16Q9GZN6 736 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 IMPDH1P20839 514 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 OXTRP30559 389 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 LCN1P31025 176 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 HTRA3P83110 453 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 STK35Q8TDR2 534 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 OR2M4Q96R27 311 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RAB9BQ9NP90 201 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SLIT1O75093 1534 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 DPP6P42658 865 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 RPS26P62854 115 aaKnown RBP12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 LIPKQ5VXJ0 399 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 FAM205BPQ63HN1 556 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TMIEQ8NEW7 156 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 BBS10Q8TAM1 723 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 THAP4Q8WY91 577 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 AGXT2Q9BYV1 514 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 FAM117AQ9C073 453 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 PXDNQ92626 1479 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 HMX3A6NHT5 357 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CD8B2A6NJW9 211 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CD8BP10966 210 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TRAM1L1Q8N609 369 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 A0A1W2PQU0 124 aa12.68□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 SCAF4O95104 1147 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms