RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 EIF2B3Q9NR50 452 aaKnown RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 LCMT1Q9UIC8 334 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TMEFF2Q9UIK5 374 aaPredicted RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 ANAPC5Q9UJX4 755 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CNOT11Q9UKZ1 510 aaKnown RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 RIMKLBQ9ULI2 386 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 PDE10AQ9Y233 779 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 PCDHGB3Q9Y5G1 929 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CHCHD2Q9Y6H1 151 aaPredicted RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 A0A096LNT2 108 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 WASHC1A8K0Z3 465 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 F8W8V4 182 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 CYR61O00622 381 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 CES2O00748 559 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SPRY1O43609 319 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 TLX2O43763 284 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 LDB3O75112 727 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 TRIM3O75382 744 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 TRAPPC6AO75865 159 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 GOSR1O95249 250 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 TGM6O95932 706 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 C1QAP02745 245 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 IFNA16P05015 189 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 FAM157CP0CG43 387 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 PAX1P15863 534 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 EGR1P18146 543 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 NAT1P18440 290 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 FPR1P21462 350 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 FUT4P22083 530 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 RPL22P35268 128 aaKnown RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 CPOXP36551 454 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 HSD17B2P37059 387 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 CDKN1AP38936 164 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 MC3RP41968 323 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 KIR2DL2P43627 348 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 CPA2P48052 419 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 STARP49675 285 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 UBASH3AP57075 661 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 KCNJ2P63252 427 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 BTN3A2P78410 334 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 CCZ1BP86790 482 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 CCZ1P86791 482 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SRYQ05066 204 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SLC13A2Q13183 592 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 PIGGQ5H8A4 983 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 TOR1AIP1Q5JTV8 583 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 PCID2Q5JVF3 399 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 HLA-DQA1Q5Y7H0 255 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 ADNP2Q6IQ32 1131 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 VWA1Q6PCB0 445 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 LCTLQ6UWM7 567 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 HSDL2Q6YN16 418 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SYDE1Q6ZW31 735 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 PLEKHM3Q6ZWE6 761 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 UBE2R2Q712K3 238 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 YRDCQ86U90 279 aaKnown RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 LUZP1Q86V48 1076 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 DENND6AQ8IWF6 608 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 C9orf40Q8IXQ3 194 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 LIX1Q8N485 282 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 OTUD6BQ8N6M0 293 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 TC2NQ8N9U0 490 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 ABHD11Q8NFV4 315 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 LILRB1Q8NHL6 650 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SLC35B2Q8TB61 432 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 NT5CQ8TCD5 201 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SLC2A12Q8TD20 617 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 PAQR8Q8TEZ7 354 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 ATG4AQ8WYN0 398 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 NEUROG1Q92886 237 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 NEIL2Q969S2 332 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 HSPBAP1Q96EW2 488 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 ZBED6CLQ96FA7 236 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SGCZQ96LD1 299 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 QRFPRQ96P65 431 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 GNRHR2Q96P88 292 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 GPR21Q99679 349 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SGPP1Q9BX95 441 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 OPN3Q9H1Y3 402 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 UBQLN3Q9H347 655 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 NHEJ1Q9H9Q4 299 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 FBXO6Q9NRD1 293 aaPredicted RBP4.79□□□□□ -1.64
PTPN4-209ENST00000469511 SAMD15Q9P1V8 674 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 IKZF3Q9UKT9 509 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 MMACHCQ9Y4U1 282 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 MRFAP1Q9Y605 127 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 PLCE1Q9P212 2302 aa4.79□□□□□ -1.64
PTPN4-209ENST00000469511 PKD1L1Q8TDX9 2849 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.78□□□□□ -1.64
PTPN4-209ENST00000469511 TCRBV7S3A2A0A539 114 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 TRBC2A0A5B9 178 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF839A8K0R7 811 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 SMTNL1A8MU46 457 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 C17orf105B2RV13 164 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 PSMD12O00232 456 aaPredicted RBP4.78□□□□□ -1.64
PTPN4-209ENST00000469511 PSMD3O43242 534 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 ZBTB14O43829 449 aa4.78□□□□□ -1.64
PTPN4-209ENST00000469511 ERN1O75460 977 aaKnown RBP4.78□□□□□ -1.64
PTPN4-209ENST00000469511 DNAJC8O75937 253 aaPredicted RBP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms