RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TMEM200AQ86VY9 491 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 CTAGE4Q8IX94 777 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 PLD6Q8N2A8 252 aaKnown RBP16.15■□□□□ 0.18
COL7A1-206ENST00000466591 RPRMLQ8N4K4 120 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 MARVELD2Q8N4S9 558 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 UHMK1Q8TAS1 419 aaKnown RBP16.15■□□□□ 0.18
COL7A1-206ENST00000466591 WDR20Q8TBZ3 569 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 PAQR8Q8TEZ7 354 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 SLC44A1Q8WWI5 657 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 SELENOMQ8WWX9 145 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 ZNF559Q9BR84 538 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 BRINP2Q9C0B6 783 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 SLC24A3Q9HC58 644 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 ZNF358Q9NW07 568 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 PSD3Q9NYI0 1048 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 SNX6Q9UNH7 406 aa16.15■□□□□ 0.18
COL7A1-206ENST00000466591 C15orf38-AP3S2A0A0A6YYH1 394 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 EXOC1LA0A1B0GW35 172 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 OR7A17O14581 309 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 ZNF354AO60765 605 aaPredicted RBP16.14■□□□□ 0.17
COL7A1-206ENST00000466591 IGHG3P01860 377 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 COL6A2P12110 1019 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 GABRA1P14867 456 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 TAC1P20366 129 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 SSTR4P31391 388 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 GALNSP34059 522 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 XKP51811 444 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 SLC37A1P57057 533 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 EBPQ15125 230 aaKnown RBP16.14■□□□□ 0.17
COL7A1-206ENST00000466591 RPS6KA2Q15349 733 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 WDR53Q7Z5U6 358 aaPredicted RBP16.14■□□□□ 0.17
COL7A1-206ENST00000466591 CDH24Q86UP0 819 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 PACS2Q86VP3 889 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 ZNF295-AS1Q8N0V1 137 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 MYRIPQ8NFW9 859 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 LRRC46Q96FV0 321 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 MRPL57Q9BQC6 102 aaKnown RBP16.14■□□□□ 0.17
COL7A1-206ENST00000466591 MRPL1Q9BYD6 325 aaKnown RBP16.14■□□□□ 0.17
COL7A1-206ENST00000466591 ENKD1Q9H0I2 346 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 MRPL46Q9H2W6 279 aaKnown RBP16.14■□□□□ 0.17
COL7A1-206ENST00000466591 MCCC2Q9HCC0 563 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 TEX10Q9NXF1 929 aaPredicted RBP16.14■□□□□ 0.17
COL7A1-206ENST00000466591 BCAP29Q9UHQ4 241 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 PCTPQ9UKL6 214 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 PSME2Q9UL46 239 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 PCNX1Q96RV3 2341 aa16.14■□□□□ 0.17
COL7A1-206ENST00000466591 WASHC1A8K0Z3 465 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 TRIM49D1C9J1S8 452 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 ERAL1O75616 437 aaKnown RBP16.13■□□□□ 0.17
COL7A1-206ENST00000466591 ZWINTO95229 277 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 FBXO45P0C2W1 286 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 GCKP35557 465 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 TRPC1P48995 793 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 ALDH9A1P49189 494 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 HYAL4Q2M3T9 481 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 EMC4Q5J8M3 183 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 MRM1Q6IN84 353 aaKnown RBP16.13■□□□□ 0.17
COL7A1-206ENST00000466591 OR4F6Q8NGB9 312 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 GPR78Q96P69 363 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 TTYH2Q9BSA4 534 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 NTMT1Q9BV86 223 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 FAIM2Q9BWQ8 316 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 ZNF703Q9H7S9 590 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-206ENST00000466591 ADAM29Q9UKF5 820 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 CFL2Q9Y281 166 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 HRH3Q9Y5N1 445 aa16.13■□□□□ 0.17
COL7A1-206ENST00000466591 A0A1B0GVC2 190 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 PGRMC2O15173 223 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 NADKO95544 446 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-206ENST00000466591 SNRPAP09012 282 aaKnown RBP16.12■□□□□ 0.17
COL7A1-206ENST00000466591 HOXD4P09016 255 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-206ENST00000466591 PORP16435 677 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-206ENST00000466591 FOXO1Q12778 655 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 NTRK2Q16620 822 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 CES4AQ5XG92 561 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 TMEM64Q6YI46 380 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 RELL1Q8IUW5 271 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 KLHL29Q96CT2 875 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 NSUN5Q96P11 429 aaKnown RBP16.12■□□□□ 0.17
COL7A1-206ENST00000466591 ZNF717Q9BY31 904 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-206ENST00000466591 OR10A5Q9H207 317 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 SLC6A15Q9H2J7 730 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 CXorf21Q9HAI6 301 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 ZNF780BQ9Y6R6 833 aa16.12■□□□□ 0.17
COL7A1-206ENST00000466591 C1orf226A1L170 272 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 GLI4P10075 376 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 CPMP14384 443 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 TSPAN8P19075 237 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 MSX1P28360 303 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 FBXW4P57775 412 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 SF3B4Q15427 424 aaKnown RBP eCLIP16.11■□□□□ 0.17
COL7A1-206ENST00000466591 GLE1Q53GS7 698 aaKnown RBP16.11■□□□□ 0.17
COL7A1-206ENST00000466591 VWA5B2Q8N398 1253 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 MMGT1Q8N4V1 131 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 OR7G1Q8NGA0 311 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 TP53INP1Q96A56 240 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 METTL7AQ9H8H3 244 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 QPCTLQ9NXS2 382 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 NPFFR2Q9Y5X5 522 aa16.11■□□□□ 0.17
COL7A1-206ENST00000466591 CHCHD2Q9Y6H1 151 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms