RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 HAUS8Q9BT25 410 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 ATG10Q9H0Y0 220 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 ANKHQ9HCJ1 492 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 STMN3Q9NZ72 180 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 ABI3Q9P2A4 366 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 ASIC3Q9UHC3 531 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 CORO1CQ9ULV4 474 aaPredicted RBP6.81□□□□□ -1.32
USP54-208ENST00000461520 SNX12Q9UMY4 172 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 PCDHGB6Q9Y5F9 930 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 SLC22A7Q9Y694 548 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 POLQO75417 2590 aa6.81□□□□□ -1.32
USP54-208ENST00000461520 FEZF1A0PJY2 475 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 SGK494L7N484 410 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ZSCAN12O43309 604 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 LCMT2O60294 686 aaKnown RBP6.8□□□□□ -1.32
USP54-208ENST00000461520 PRAMEF2O60811 474 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 TSPAN12O95859 305 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 F10P00742 488 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 STATHP02808 62 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 CDH1P12830 882 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ELAVL4P26378 380 aaKnown RBP6.8□□□□□ -1.32
USP54-208ENST00000461520 CCR8P51685 355 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 CDKN2DP55273 166 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 SKP1P63208 163 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ZNF33BQ06732 778 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 HERC3Q15034 1050 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 EXT1Q16394 746 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 PHKG1Q16816 387 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 BTBD16Q32M84 506 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 SPDYE7PQ495Y7 208 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 RBM20Q5T481 1227 aaKnown RBP6.8□□□□□ -1.32
USP54-208ENST00000461520 TEDDM1Q5T9Z0 273 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 DUPD1Q68J44 220 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 FAM45BPQ6NSW5 357 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 NIPAL1Q6NVV3 410 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 H3F3CQ6NXT2 135 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 MBOAT1Q6ZNC8 495 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 LANCL3Q6ZV70 420 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ANKRD37Q7Z713 158 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 FJX1Q86VR8 437 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 SLC26A11Q86WA9 606 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ADGRG3Q86Y34 549 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 PDIK1LQ8N165 341 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 TBC1D19Q8N5T2 526 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 MFSD9Q8NBP5 474 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 PLPP5Q8NEB5 264 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 OR4K1Q8NGD4 311 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 OR56A3Q8NH54 315 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ZCCHC10Q8TBK6 192 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 M1APQ8TC57 530 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 FAM45AQ8TCE6 357 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ATL1Q8WXF7 558 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 SNF8Q96H20 258 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 PDLIM5Q96HC4 596 aaKnown RBP6.8□□□□□ -1.32
USP54-208ENST00000461520 LPAR4Q99677 370 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 MACROD1Q9BQ69 325 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 TRIM54Q9BYV2 358 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 REXO4Q9GZR2 422 aaKnown RBP6.8□□□□□ -1.32
USP54-208ENST00000461520 DDX47Q9H0S4 455 aaKnown RBP6.8□□□□□ -1.32
USP54-208ENST00000461520 PRDM13Q9H4Q3 707 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 TMEM140Q9NV12 185 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 ARL15Q9NXU5 204 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 HCN3Q9P1Z3 774 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 TESQ9UGI8 421 aaKnown RBP6.8□□□□□ -1.32
USP54-208ENST00000461520 SH2B3Q9UQQ2 575 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 NAALAD2Q9Y3Q0 740 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 NOX1Q9Y5S8 564 aa6.8□□□□□ -1.32
USP54-208ENST00000461520 POLEQ07864 2286 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 FBN2P35556 2912 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 IGHV3-20A0A0C4DH32 117 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 TRBC2A0A5B9 178 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 ARHGAP10A1A4S6 786 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 URADA6NGE7 173 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 A8MUI8 341 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 MAGEB17A8MXT2 336 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 NDUFS4O43181 175 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 ZG16O60844 167 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 RDH16O75452 317 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 AMY1AP04745 511 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 TCP1P17987 556 aaKnown RBP6.79□□□□□ -1.32
USP54-208ENST00000461520 GCSHP23434 173 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 JAK1P23458 1154 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 IVDP26440 423 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 PTH2RP49190 550 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 KCNK10P57789 538 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 RHAGQ02094 409 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 RBPJQ06330 500 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 MGAT2Q10469 447 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 CSHL1Q14406 222 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 MORF4L2Q15014 288 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 NSDHLQ15738 373 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 MEP1AQ16819 746 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 ACER2Q5QJU3 275 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 TMEM207Q6UWW9 146 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 GFRALQ6UXV0 394 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 PRIMA1Q86XR5 153 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 PDSS2Q86YH6 399 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 PPM1NQ8N819 430 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 GPATCH11Q8N954 259 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 NTN5Q8WTR8 489 aaPredicted RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms