RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 GABRR3A8MPY1 467 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 OR2B3O76000 313 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 FKBP9O95302 570 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 SMIM10L1P0DMW3 83 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 LAMP1P11279 417 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 PIM1P11309 404 aaPredicted RBP9.74□□□□□ -0.85
USP39-210ENST00000459775 HIST1H1TP22492 207 aaPredicted RBP9.74□□□□□ -0.85
USP39-210ENST00000459775 ALDH9A1P49189 494 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 DIO1P49895 249 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 POLR2JP52435 117 aaKnown RBP9.74□□□□□ -0.85
USP39-210ENST00000459775 C2orf80Q0P641 193 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 TRIP6Q15654 476 aaKnown RBP9.74□□□□□ -0.85
USP39-210ENST00000459775 UGT8Q16880 541 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 PRTGQ2VWP7 1150 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 ZNF750Q32MQ0 723 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 INAVAQ3KP66 663 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 PDCD4Q53EL6 469 aaKnown RBP9.74□□□□□ -0.85
USP39-210ENST00000459775 TM4SF20Q53R12 229 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 PAGE3Q5JUK9 113 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 C1orf189Q5VU69 101 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 GALNT18Q6P9A2 607 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 TRIM40Q6P9F5 258 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 PROSER1Q86XN7 944 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 RIMKLAQ8IXN7 391 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 CAMKVQ8NCB2 501 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.74□□□□□ -0.85
USP39-210ENST00000459775 SMIM10Q96HG1 83 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 NSL1Q96IY1 281 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 QRFPRQ96P65 431 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 KCNC2Q96PR1 638 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 CSF3RQ99062 836 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 IFT22Q9H7X7 185 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 DDX31Q9H8H2 851 aaKnown RBP9.74□□□□□ -0.85
USP39-210ENST00000459775 SEMA5BQ9P283 1151 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 PACSIN3Q9UKS6 424 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 ERVK-11Q9UQG0 969 aa9.74□□□□□ -0.85
USP39-210ENST00000459775 CHD8Q9HCK8 2581 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 HYKKA2RU49 373 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 MEN1O00255 615 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 PGRMC2O15173 223 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 FOXS1O43638 330 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 RDH16O75452 317 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 MYO1DO94832 1006 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 SEMA3DO95025 777 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 FAM58BPP0C7Q3 252 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ESRRAP11474 423 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 POU2F1P14859 743 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 SERPINB1P30740 379 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 OR1D4P47884 311 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 HSPA13P48723 471 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 HNRNPFP52597 415 aaKnown RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 CLDN8P56748 225 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 STXBP1P61764 594 aaKnown RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 SLC25A3Q00325 362 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 INSM1Q01101 510 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 RELAQ04206 551 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 C19orf57Q0VDD7 668 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 KCNAB2Q13303 367 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ERV3-1Q14264 604 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 C21orf62-AS1Q17RA5 79 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 CRTC2Q53ET0 693 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 TMEM35AQ53FP2 167 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 OR4F3Q6IEY1 312 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 BLOC1S3Q6QNY0 202 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 TTLL10Q6ZVT0 673 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 KRT74Q7RTS7 529 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 PIP4P1Q86T03 277 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ZNF554Q86TJ5 538 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 AKAP14Q86UN6 197 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 NUDT13Q86X67 352 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 SLC38A9Q8NBW4 561 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 DOK4Q8TEW6 326 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 GAL3ST3Q96A11 431 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 CIDECQ96AQ7 238 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 SLC7A6OSQ96CW6 309 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 ZNF501Q96CX3 271 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 YIPF4Q9BSR8 244 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 SLC6A13Q9NSD5 602 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ASIC5Q9NY37 505 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 HCN3Q9P1Z3 774 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ASB4Q9Y574 426 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 CELSR3Q9NYQ7 3312 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 FAM149AA5PLN7 773 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 B2RBV5 119 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ZNF749O43361 778 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 SRPX2O60687 465 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 NTRK1P04629 796 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 SNRPB2P08579 225 aaKnown RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 ITIH1P19827 911 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ATP4BP51164 291 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ID2Q02363 134 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 ZFP36L1Q07352 338 aaKnown RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 ZNF763Q0D2J5 394 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 MAD2L1Q13257 205 aaPredicted RBP9.73□□□□□ -0.85
USP39-210ENST00000459775 COTL1Q14019 142 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 MPEG1Q2M385 716 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 FAM205BPQ63HN1 556 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 FAM71E1Q6IPT2 247 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 CYB5D1Q6P9G0 228 aa9.73□□□□□ -0.85
USP39-210ENST00000459775 OR4N5Q8IXE1 308 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms