RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SLAMF7Q9NQ25 335 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 SLC52A3Q9NQ40 469 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 P4HTMQ9NXG6 502 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 CCDC167Q9P0B6 97 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 CLCA3PQ9Y6N3 262 aa10.82□□□□□ -0.68
SCN9A-204ENST00000452182 PCSK5Q92824 1860 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 ACACAQ13085 2346 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PRSS51A0A1B0GVH4 220 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 A0A1W2PRB8 838 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 C17orf105B2RV13 164 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PLOD2O00469 737 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PEX12O00623 359 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 FCHO1O14526 889 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 DYRK3O43781 588 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 DCTN3O75935 186 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 HPP00738 406 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 IFNA16P05015 189 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 NCBP2P52298 156 aaKnown RBP eCLIP10.81□□□□□ -0.68
SCN9A-204ENST00000452182 KCNK10P57789 538 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PHC1P78364 1004 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 CDC20Q12834 499 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 MAP4K2Q12851 820 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 KLF10Q13118 480 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 UBAP2LQ14157 1087 aaKnown RBP10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PRICKLE4Q2TBC4 344 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 AGKQ53H12 422 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 ZNF628Q5EBL2 1059 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 OR4F3Q6IEY1 312 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PAPD4Q6PIY7 484 aaKnown RBP10.81□□□□□ -0.68
SCN9A-204ENST00000452182 CCDC81Q6ZN84 652 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 GALNT12Q8IXK2 581 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 NFAM1Q8NET5 270 aaPredicted RBP10.81□□□□□ -0.68
SCN9A-204ENST00000452182 OR5P2Q8WZ92 322 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PPWD1Q96BP3 646 aaKnown RBP10.81□□□□□ -0.68
SCN9A-204ENST00000452182 CTHRC1Q96CG8 243 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 ART5Q96L15 291 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 IMMP1LQ96LU5 166 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 MESP1Q9BRJ9 268 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 GLIPR2Q9H4G4 154 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 NEUROD4Q9HD90 331 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 PNO1Q9NRX1 252 aaKnown RBP10.81□□□□□ -0.68
SCN9A-204ENST00000452182 BTNL2Q9UIR0 455 aa10.81□□□□□ -0.68
SCN9A-204ENST00000452182 NSG1A0A0A6YYJ2 146 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 K7ENP7 123 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 CFLARO15519 480 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 NKX2-8O15522 239 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 ICAM2P13598 275 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 TNNI3P19429 210 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 NT5EP21589 574 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 GPR143P51810 404 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 DGKQP52824 942 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 MANFP55145 182 aaKnown RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 EEF1A2Q05639 463 aaKnown RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 MGAT2Q10469 447 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 ATP1A4Q13733 1029 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 EXT1Q16394 746 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 PLAG1Q6DJT9 500 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 INO80CQ6PI98 192 aaPredicted RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 DGAT2L6Q6ZPD8 337 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 TMEM102Q8N9M5 508 aaPredicted RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 ANKK1Q8NFD2 765 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 B3GNT7Q8NFL0 401 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 OR9A2Q8NGT5 310 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 SNRNP27Q8WVK2 155 aaKnown RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 SPDL1Q96EA4 605 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 FBXL20Q96IG2 436 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 FER1L6-AS2Q96M78 137 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 CCDC115Q96NT0 180 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 LRRC37BQ96QE4 947 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 OR52E6Q96RD3 313 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 CCDC106Q9BWC9 280 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 SEMA4CQ9C0C4 833 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 MAT2BQ9NZL9 334 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 ZNF639Q9UID6 485 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 CAPN7Q9Y6W3 813 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 A0A087WV62 115 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 IGHV3-20A0A0C4DH32 117 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 MYOCOSA0A1B0GUC4 107 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 A0A1W2PP18 115 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 CDC14CA4D256 554 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 CCDC154A6NI56 674 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 C9JVG2 144 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 PLOD3O60568 738 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 SEC24DO94855 1032 aaPredicted RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 DDAH2O95865 285 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 IGKV3-11P04433 115 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 SNRPB2P08579 225 aaKnown RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 SOX18P35713 384 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 TMPRSS3P57727 454 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 SLC26A5P58743 744 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 AP2B1P63010 937 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 FUT7Q11130 342 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 MAPRE2Q15555 327 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 DCAF10Q5QP82 559 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 C6orf163Q5TEZ5 329 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 FAM91A1Q658Y4 838 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 ZNF551Q7Z340 670 aaPredicted RBP10.8□□□□□ -0.68
SCN9A-204ENST00000452182 VWA5B2Q8N398 1253 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 APCDD1LQ8NCL9 501 aa10.8□□□□□ -0.68
SCN9A-204ENST00000452182 OR1N1Q8NGS0 311 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms