RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ACOT4Q8N9L9 421 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 C16orf78Q8WTQ4 265 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 MARVELD3Q96A59 401 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 THOC3Q96J01 351 aaKnown RBP11.38□□□□□ -0.59
PTPRF-208ENST00000437607 TAGLN3Q9UI15 199 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 ENTPD4Q9Y227 616 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 MRPS2Q9Y399 296 aaKnown RBP11.38□□□□□ -0.59
PTPRF-208ENST00000437607 MAU2Q9Y6X3 613 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 HIVEP1P15822 2718 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 MED13LQ71F56 2210 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 DYTNA2CJ06 578 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 HYKKA2RU49 373 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 FAM234BA2RU67 622 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 ERICH4A6NGS2 130 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 BBIP1A8MTZ0 92 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 CAPN14A8MX76 684 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 C9JVG2 144 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 ANGPT2O15123 496 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 CFLARO15519 480 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 AKAP10O43572 662 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 TMPRSS11DO60235 418 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 GALR3O60755 368 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 RDH16O75452 317 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 STSP08842 583 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 FAM58BPP0C7Q3 252 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 NR2F6P10588 404 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 PIM1P11309 404 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 BUD31P41223 144 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 TDGF1P3P51864 188 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 POLR2JP52435 117 aaKnown RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 PER3P56645 1201 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 CLDN8P56748 225 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 UFM1P61960 85 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 MFAP5Q13361 173 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 CYLC2Q14093 348 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 FAM53BQ14153 422 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 HEPACAMQ14CZ8 416 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 FAM214AQ32MH5 1076 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 ZNF324BQ6AW86 544 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 SP5Q6BEB4 398 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 RPUSD3Q6P087 351 aaKnown RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 C6orf89Q6UWU4 347 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 ISLR2Q6UXK2 745 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 TREML1Q86YW5 311 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 POU5F2Q8N7G0 328 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 AMER2Q8N7J2 671 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 ADAMTS18Q8TE60 1221 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 PSMF1Q92530 271 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 GFM2Q969S9 779 aaKnown RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 TESCQ96BS2 214 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 SPDL1Q96EA4 605 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 MVB12AQ96EY5 273 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 PRPF18Q99633 342 aaKnown RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 TUBB6Q9BUF5 446 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 WDR41Q9HAD4 459 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 SEMA3GQ9NS98 782 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 ATAD3AQ9NVI7 634 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 BAIAP2L1Q9UHR4 511 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 FBXW2Q9UKT8 454 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 WBP11Q9Y2W2 641 aaKnown RBP11.37□□□□□ -0.59
PTPRF-208ENST00000437607 NAALAD2Q9Y3Q0 740 aa11.37□□□□□ -0.59
PTPRF-208ENST00000437607 A0A0A6YYC8 382 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 CCDC154A6NI56 674 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 I3L1I5 382 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 ANKRD28O15084 1053 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 HNRNPRO43390 633 aaKnown RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 HNRNPCL1O60812 293 aaKnown RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 NSA2O95478 260 aaKnown RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 B3GALT4O96024 378 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 SNRPB2P08579 225 aaKnown RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 SMIM10L1P0DMW3 83 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 ESRRAP11474 423 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 COX4I1P13073 169 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 DDCP20711 480 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 CALB2P22676 271 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 GRNP28799 593 aaKnown RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 ALDH9A1P49189 494 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 MNAT1P51948 309 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 HNRNPH2P55795 449 aaKnown RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 C21orf58P58505 322 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 MXRA7P84157 204 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 TNFRSF17Q02223 184 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 SLAMF1Q13291 335 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 TLR1Q15399 786 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 FAM174BQ3ZCQ3 159 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 MMEL1Q495T6 779 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 FAM71E1Q6IPT2 247 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 ZNF771Q7L3S4 317 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 PRSS41Q7RTY9 318 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 FJX1Q86VR8 437 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 ARHGEF39Q8N4T4 335 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 KRTCAP2Q8N6L1 136 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 OR9A4Q8NGU2 314 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 RP9Q8TA86 221 aaKnown RBP11.36□□□□□ -0.59
PTPRF-208ENST00000437607 STT3BQ8TCJ2 826 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 C8orf44Q96CB5 159 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 PPCDCQ96CD2 204 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 MTERF3Q96E29 417 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 SMIM10Q96HG1 83 aa11.36□□□□□ -0.59
PTPRF-208ENST00000437607 EGLN2Q96KS0 407 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms