RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 FBXO25Q8TCJ0 367 aa13.6□□□□□ -0.23
RPS28-201ENST00000417088 REPS1Q96D71 796 aa13.6□□□□□ -0.23
RPS28-201ENST00000417088 POLDIP3Q9BY77 421 aaKnown RBP13.6□□□□□ -0.23
RPS28-201ENST00000417088 CXXC4Q9H2H0 198 aa13.6□□□□□ -0.23
RPS28-201ENST00000417088 CCM2LQ9NUG4 571 aaPredicted RBP13.6□□□□□ -0.23
RPS28-201ENST00000417088 ZNF358Q9NW07 568 aa13.6□□□□□ -0.23
RPS28-201ENST00000417088 PSD3Q9NYI0 1048 aa13.6□□□□□ -0.23
RPS28-201ENST00000417088 PYCARDQ9ULZ3 195 aa13.6□□□□□ -0.23
RPS28-201ENST00000417088 FREM3P0C091 2139 aa13.6□□□□□ -0.23
RPS28-201ENST00000417088 MAP1AP78559 2803 aaPredicted RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 ACANP16112 2415 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 A0A087X1B8 175 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 C2orf92A0A1B0GVN3 265 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 HMX2A2RU54 273 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 FAM221AA4D161 298 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 AHRRA9YTQ3 701 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 KDM4EB2RXH2 506 aaPredicted RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 FOXE1O00358 373 aaPredicted RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 PGRMC2O15173 223 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 UGDHO60701 494 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 EPPINO95925 133 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GBAP04062 536 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GFAPP14136 432 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GDF1P27539 372 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 CEACAM8P31997 349 aaPredicted RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 ALDH18A1P54886 795 aaKnown RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 WNT3P56703 355 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GUCY2DQ02846 1103 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 CAV1Q03135 178 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 CRYZQ08257 329 aaKnown RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 DUSP8Q13202 625 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GTF2H2Q13888 395 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 ACAP2Q15057 778 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 FAM83EQ2M2I3 478 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 ACSF3Q4G176 576 aaPredicted RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 TBCELQ5QJ74 424 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 MROH9Q5TGP6 573 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 TMEM198Q66K66 360 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 BICRALQ6AI39 1079 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GTF2H2CQ6P1K8 395 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 CYP20A1Q6UW02 462 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 ZDHHC24Q6UX98 284 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GOLGA7Q7Z5G4 137 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 TAGAPQ8N103 731 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 L3MBTL4Q8NA19 623 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 DIO2Q92813 273 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 NINJ1Q92982 152 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 TP53INP1Q96A56 240 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 ZNF597Q96LX8 424 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 FOXC2Q99958 501 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 GPATCH1Q9BRR8 931 aaKnown RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 TMUB1Q9BVT8 246 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 LIME1Q9H400 295 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 IPPKQ9H8X2 491 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 WDR41Q9HAD4 459 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 CXorf21Q9HAI6 301 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 SNX15Q9NRS6 342 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 CRIM1Q9NZV1 1036 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 UTP11Q9Y3A2 253 aaKnown RBP13.59□□□□□ -0.23
RPS28-201ENST00000417088 RNF11Q9Y3C5 154 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 ARHGAP21Q5T5U3 1957 aa13.59□□□□□ -0.23
RPS28-201ENST00000417088 ZNF469Q96JG9 3925 aaPredicted RBP13.58□□□□□ -0.24
RPS28-201ENST00000417088 C15orf38-AP3S2A0A0A6YYH1 394 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 CCDC189A1A4V9 331 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 TP53I11O14683 189 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 DIAPH2O60879 1101 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 SIX3O95343 332 aaPredicted RBP13.58□□□□□ -0.24
RPS28-201ENST00000417088 ACSL3O95573 720 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 CT62P0C5K7 136 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 CD99P14209 185 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 UQCRC1P31930 480 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 PIK3CGP48736 1102 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 FBXW4P57775 412 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 FUT7Q11130 342 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 RPS6KA2Q15349 733 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 FNDC7Q5VTL7 733 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 POMZP3Q6PJE2 187 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 CCDC91Q7Z6B0 441 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 NUDT13Q86X67 352 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 ZNF615Q8N8J6 731 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 TNIP2Q8NFZ5 429 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 SPPL2AQ8TCT8 520 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 GPR78Q96P69 363 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 TIMP4Q99727 224 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 SH3GL2Q99962 352 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 UBQLN3Q9H347 655 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 RASSF1Q9NS23 344 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 ST6GALNAC2Q9UJ37 374 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 NPFFR2Q9Y5X5 522 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 IKBKGQ9Y6K9 419 aa13.58□□□□□ -0.24
RPS28-201ENST00000417088 CAPN14A8MX76 684 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 DVL2O14641 736 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 TRAPPC6AO75865 159 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 SNX4O95219 450 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 BMP5P22003 454 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 PEX19P40855 299 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 CDK9P50750 372 aaKnown RBP13.57□□□□□ -0.24
RPS28-201ENST00000417088 FBXL19-AS1Q494R0 122 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 HLA-DQA1Q5Y7H0 255 aa13.57□□□□□ -0.24
RPS28-201ENST00000417088 OR52E8Q6IFG1 317 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms