RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 PDP1Q9P0J1 537 aaPredicted RBP12.22□□□□□ -0.45
SMARCB1-203ENST00000407082 SATB2Q9UPW6 733 aa12.22□□□□□ -0.45
SMARCB1-203ENST00000407082 FAM32AQ9Y421 112 aaKnown RBP12.22□□□□□ -0.45
SMARCB1-203ENST00000407082 PCYT1BQ9Y5K3 369 aaPredicted RBP12.22□□□□□ -0.45
SMARCB1-203ENST00000407082 GMPPBQ9Y5P6 360 aa12.22□□□□□ -0.45
SMARCB1-203ENST00000407082 USP9XQ93008 2570 aaPredicted RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 AQP9O43315 295 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 DXOO77932 396 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 CLIC3O95833 236 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 SLC5A2P31639 672 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 SHMT2P34897 504 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 MAPK12P53778 367 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 ABATP80404 500 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 REEP5Q00765 189 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 PMS2P3Q13401 168 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 DCTN2Q13561 401 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 SCARB2Q14108 478 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 KRT33BQ14525 404 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 ELOCQ15369 112 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 TMEM35AQ53FP2 167 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 CRB2Q5IJ48 1285 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 KHDRBS2Q5VWX1 349 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 DHRS4L2Q6PKH6 230 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 ZNF574Q6ZN55 896 aaPredicted RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 ARMC8Q8IUR7 673 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 TTC29Q8NA56 475 aaPredicted RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 CHDHQ8NE62 594 aaPredicted RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 OR13F1Q8NGS4 319 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 FBLIM1Q8WUP2 373 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 SNRNP27Q8WVK2 155 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 GEMIN6Q8WXD5 167 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 TMIGD2Q96BF3 282 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 C12orf43Q96C57 262 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 THAP11Q96EK4 314 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 NODALQ96S42 347 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 LRRC61Q9BV99 259 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 OR51B5Q9H339 312 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 ASCL3Q9NQ33 180 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 UCKL1Q9NWZ5 548 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 TRNAU1APQ9NX07 287 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 PLEKHM1Q9Y4G2 1056 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 PCDHGB1Q9Y5G3 927 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 PCDHGA8Q9Y5G5 932 aa12.21□□□□□ -0.45
SMARCB1-203ENST00000407082 KRT87PA6NCN2 255 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 C5orf58C9J3I9 102 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 TNFRSF21O75509 655 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 CLEC3AO75596 197 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 SEC14L2O76054 403 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ANGPTL1O95841 491 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 C6orf47O95873 294 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ACP5P13686 325 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 DRD2P14416 443 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ITIH1P19827 911 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 CCNA2P20248 432 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 DDCP20711 480 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ELK4P28324 431 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 RAB15P59190 212 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ISL1P61371 349 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 CDK6Q00534 326 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 TEKQ02763 1124 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 CD47Q08722 323 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ILF3Q12906 894 aaKnown RBP eCLIP12.2□□□□□ -0.461e-9■■□□□ 11.4
SMARCB1-203ENST00000407082 CDCP2Q5VXM1 449 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 TAF8Q7Z7C8 310 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 NUDT13Q86X67 352 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 GKN2Q86XP6 184 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 NAGSQ8N159 534 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 DEPDC4Q8N2C3 294 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 SRFBP1Q8NEF9 429 aaKnown RBP12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 OR4K1Q8NGD4 311 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 OR5AR1Q8NGP9 310 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 CCL4L1Q8NHW4 92 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 SPPL2AQ8TCT8 520 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 GPBAR1Q8TDU6 330 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 GIPC3Q8TF64 312 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ZBED6CLQ96FA7 236 aaPredicted RBP12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 FERD3LQ96RJ6 166 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 FAIM2Q9BWQ8 316 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 MS4A8Q9BY19 250 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 AMBRA1Q9C0C7 1298 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 RIBC2Q9H4K1 309 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 ZNF556Q9HAH1 456 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 PLGRKTQ9HBL7 147 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 SLC23A2Q9UGH3 650 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 TMEFF2Q9UIK5 374 aaPredicted RBP12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 DOLKQ9UPQ8 538 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 CSNK1G3Q9Y6M4 447 aa12.2□□□□□ -0.46
SMARCB1-203ENST00000407082 TNFRSF11BO00300 401 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 SLC1A7O00341 560 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 PDPK1O15530 556 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 CELA2BP08218 269 aaPredicted RBP12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 IL3P08700 152 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 ARAFP10398 606 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 AK4P27144 223 aaPredicted RBP12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 NDUFS1P28331 727 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 IST1P53990 364 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 MANFP55145 182 aaKnown RBP12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 SMIM11AP58511 58 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 DSTNP60981 165 aa12.19□□□□□ -0.46
SMARCB1-203ENST00000407082 HBA1P69905 142 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms