RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 TP53I11O14683 189 aa17.34■□□□□ 0.37
COL18A1-204ENST00000400337 SPRED3Q2MJR0 410 aa17.34■□□□□ 0.37
COL18A1-204ENST00000400337 PKDCCQ504Y2 493 aa17.34■□□□□ 0.37
COL18A1-204ENST00000400337 HTR3DQ70Z44 454 aa17.34■□□□□ 0.37
COL18A1-204ENST00000400337 NAGSQ8N159 534 aa17.34■□□□□ 0.37
COL18A1-204ENST00000400337 MGLLQ99685 303 aa17.34■□□□□ 0.37
COL18A1-204ENST00000400337 PLEKHA6Q9Y2H5 1048 aa17.34■□□□□ 0.37
COL18A1-204ENST00000400337 KIF13AQ9H1H9 1805 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 LOC285095A0A1B0GVY8 99 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 RGRP47804 291 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 GPR143P51810 404 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 DEFB110Q30KQ9 67 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 RPL13AP3Q6NVV1 102 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 OR13J1Q8NGT2 312 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 NXPE2Q96DL1 559 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 WDR77Q9BQA1 342 aaPredicted RBP17.33■□□□□ 0.37
COL18A1-204ENST00000400337 ANKMY1Q9P2S6 941 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 PCDHGB6Q9Y5F9 930 aa17.33■□□□□ 0.37
COL18A1-204ENST00000400337 SOCS7O14512 581 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 PPM1BO75688 479 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 GJB3O75712 270 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 OXTRP30559 389 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 HLCSP50747 726 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 SAMD12Q8N8I0 201 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 TMEM174Q8WUU8 243 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 TMEM41AQ96HV5 264 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 SRA1Q9HD15 236 aaKnown RBP17.33■□□□□ 0.36
COL18A1-204ENST00000400337 TIAM2Q8IVF5 1701 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 A0A1W2PPK0 400 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 CDC40O60508 579 aaKnown RBP eCLIP17.33■□□□□ 0.368e-7■■■■□ 21.4
COL18A1-204ENST00000400337 ARHGEF15O94989 841 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 SLITRK5O94991 958 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 CSF2P04141 144 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 RPS17P08708 135 aaKnown RBP17.33■□□□□ 0.36
COL18A1-204ENST00000400337 ADORA3P0DMS8 318 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 SYCE2Q6PIF2 218 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 TRIM73Q86UV7 250 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 SLC37A3Q8NCC5 494 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 PELOQ9BRX2 385 aaKnown RBP17.33■□□□□ 0.36
COL18A1-204ENST00000400337 METTL8Q9H825 291 aaKnown RBP17.33■□□□□ 0.36
COL18A1-204ENST00000400337 KCNJ13O60928 360 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 MITFO75030 526 aaPredicted RBP17.33■□□□□ 0.36
COL18A1-204ENST00000400337 SDC3O75056 442 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 OXSR1O95747 527 aaPredicted RBP17.33■□□□□ 0.36
COL18A1-204ENST00000400337 AK4P27144 223 aaPredicted RBP17.33■□□□□ 0.36
COL18A1-204ENST00000400337 PHC1P78364 1004 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 FAM189A2Q15884 450 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 C1orf189Q5VU69 101 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 SLC44A3Q8N4M1 653 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 TCEAL4Q96EI5 215 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 EMCNQ9ULC0 261 aa17.33■□□□□ 0.36
COL18A1-204ENST00000400337 MYH15Q9Y2K3 1946 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 OR52A4PA6NMU1 304 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 OR2AT4A6NND4 320 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 H0YJX3 145 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 SMAD9O15198 467 aaKnown RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 IL33O95760 270 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 DUSP3P51452 185 aaPredicted RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 RGNQ15493 299 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 CTC1Q2NKJ3 1217 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 OR2L8Q8NGY9 312 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 ARRDC2Q8TBH0 407 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 THAP4Q8WY91 577 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 TUBA1CQ9BQE3 449 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 PAK1IP1Q9NWT1 392 aaPredicted RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 NENFQ9UMX5 172 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 PPP6CO00743 305 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 DENRO43583 198 aaKnown RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 AK1P00568 194 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 T-ENOLP0DO92 83 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 NDUFV2P19404 249 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 S1PR1P21453 382 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 PYCR1P32322 319 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 HNRNPA1L2Q32P51 320 aaKnown RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 ALKAL1Q6UXT8 129 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 CPXM2Q8N436 756 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 SPERTQ8NA61 448 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 PELI2Q9HAT8 420 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 FARSAQ9Y285 508 aaKnown RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 ITIH1P19827 911 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 DCKP27707 260 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 TM4SF4P48230 202 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 DUS1LQ6P1R4 473 aaKnown RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 DTWD1Q8N5C7 304 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 ZDHHC1Q8WTX9 485 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 GATAD2BQ8WXI9 593 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 SGTBQ96EQ0 304 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 HS6ST2Q96MM7 605 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 ITGB7P26010 798 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 MPP7Q5T2T1 576 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 DGLUCYQ7Z3D6 616 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 ZNF283Q8N7M2 679 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 INO80EQ8NBZ0 244 aaPredicted RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 CIDECQ96AQ7 238 aaPredicted RBP17.32■□□□□ 0.36
COL18A1-204ENST00000400337 BEX2Q9BXY8 128 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 BEX1Q9HBH7 125 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 C12orf4Q9NQ89 552 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 ASB6Q9NWX5 421 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 EXTL2Q9UBQ6 330 aa17.32■□□□□ 0.36
COL18A1-204ENST00000400337 NOX1Q9Y5S8 564 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms