RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FBXO45P0C2W1 286 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 CT62P0C5K7 136 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ADH7P40394 386 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 GAS1P54826 345 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 EBPQ15125 230 aaKnown RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 PDCD2Q16342 344 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 C6orf89Q6UWU4 347 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MSRB3Q8IXL7 192 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 C9orf40Q8IXQ3 194 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MMP21Q8N119 569 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 OR52E4Q8NGH9 312 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 SLC2A12Q8TD20 617 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 TSLPQ969D9 159 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ZBED6CLQ96FA7 236 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 LHPPQ9H008 270 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 NSRP1Q9H0G5 558 aaKnown RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 WDR55Q9H6Y2 383 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ABCD2Q9UBJ2 740 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 FBXL4Q9UKA2 621 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ZMIZ1Q9ULJ6 1067 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 CFL2Q9Y281 166 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 RAXQ9Y2V3 346 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MRPS18CQ9Y3D5 142 aaKnown RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF451Q9Y4E5 1061 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MRPS18BQ9Y676 258 aaKnown RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MAU2Q9Y6X3 613 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 SAP18O00422 153 aaKnown RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 PDPK1O15530 556 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 TSPAN2O60636 221 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 PEX11AO75192 247 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 CRCPO75575 148 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MPIP34949 423 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 PPICP45877 212 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 C2orf80Q0P641 193 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MFAP5Q13361 173 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 TSTA3Q13630 321 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 SFT2D3Q587I9 215 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 DDIASQ8IXT1 998 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ZFP28Q8NHY6 868 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 HAS2Q92819 552 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 WDR41Q9HAD4 459 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 DUSP22Q9NRW4 184 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 UTS2RQ9UKP6 389 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 PCDHGA10Q9Y5H3 936 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ARHGAP10A1A4S6 786 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 UPK1AO00322 258 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 CCDC22O60826 627 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MAOAP21397 527 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 UQCRC2P22695 453 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 UFM1P61960 85 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 SRSF6Q13247 344 aaKnown RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 TGIF1Q15583 401 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MAPK11Q15759 364 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 B3GNTL1Q67FW5 361 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 LANCL3Q6ZV70 420 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 CCDC80Q76M96 950 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ANKRD46Q86W74 232 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 GOLM1Q8NBJ4 401 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ZFP90Q8TF47 636 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ZMYND15Q9H091 742 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 SOX17Q9H6I2 414 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF552Q9H707 407 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 SUCOQ9UBS9 1254 aaKnown RBP6.52□□□□□ -1.37
LIMA1-202ENST00000394943 MKL2Q9ULH7 1088 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 ARL2BPQ9Y2Y0 163 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 C2orf92A0A1B0GVN3 265 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 A0A1W2PQD3 144 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 FBP2O00757 339 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 COQ9O75208 318 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ERN1O75460 977 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 SKAP2O75563 359 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 LAMP1P11279 417 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ALAS2P22557 587 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PIK3R1P27986 724 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 XKP51811 444 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 POLR2JP52435 117 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ARFIP2P53365 341 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 OLR1P78380 273 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 SNTA1Q13424 505 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ATP1A4Q13733 1029 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PTGR1Q14914 329 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 NTRK2Q16620 822 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 FNDC7Q5VTL7 733 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CDC73Q6P1J9 531 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 SCIMPQ6UWF3 145 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 TICAM1Q8IUC6 712 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 OR56A1Q8NGH5 318 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 RP9Q8TA86 221 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 ROPN1LQ96C74 230 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PPCDCQ96CD2 204 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 NAF1Q96HR8 494 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 CCT8L2Q96SF2 557 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PRPF18Q99633 342 aaKnown RBP6.51□□□□□ -1.37
LIMA1-202ENST00000394943 DUSP26Q9BV47 211 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 NUDT9Q9BW91 350 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 C1orf21Q9H246 121 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 TMEM38AQ9H6F2 299 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 GIMAP2Q9UG22 337 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 AP3M1Q9Y2T2 418 aa6.51□□□□□ -1.37
LIMA1-202ENST00000394943 PSMD12O00232 456 aaPredicted RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms