RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 GHDCQ8N2G8 530 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 UBE2J2Q8N2K1 259 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 LILRB2Q8N423 598 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 OR10G2Q8NGC3 310 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 MAFAQ8NHW3 353 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 UTP15Q8TED0 518 aaKnown RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 DACT3Q96B18 629 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 ECHDC3Q96DC8 303 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 SLC6A17Q9H1V8 727 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 IFT22Q9H7X7 185 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 BPIFA1Q9NP55 256 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 PLEKHB1Q9UF11 243 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 FKBPLQ9UIM3 349 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 FNDC3AQ9Y2H6 1198 aaKnown RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 PCDHGB7Q9Y5F8 929 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 SMLR1H3BR10 107 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 TNFRSF11BO00300 401 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 ORC5O43913 435 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 TNFRSF21O75509 655 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 LHCGRP22888 699 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 HMGCLP35914 325 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 TGM4P49221 684 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 CACNG1Q06432 222 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 GALEQ14376 348 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 CDKN3Q16667 212 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 HNRNPA1L2Q32P51 320 aaKnown RBP10.57□□□□□ -0.72
CUX1-204ENST00000393824 CDKL4Q5MAI5 379 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 DDI2Q5TDH0 399 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 BRAT1Q6PJG6 821 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 TSEN54Q7Z6J9 526 aaKnown RBP10.57□□□□□ -0.72
CUX1-204ENST00000393824 CSGALNACT1Q8TDX6 532 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 WFIKKN2Q8TEU8 576 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 ZBED6CLQ96FA7 236 aaPredicted RBP10.57□□□□□ -0.72
CUX1-204ENST00000393824 ZNF578Q96N58 590 aaPredicted RBP10.57□□□□□ -0.72
CUX1-204ENST00000393824 FAM129BQ96TA1 746 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 C19orf43Q9BQ61 176 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 SOSTQ9BQB4 213 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 SUV39H2Q9H5I1 410 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 RDH14Q9HBH5 336 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 NDUFB11Q9NX14 153 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 GPRC5BQ9NZH0 403 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 THAP10Q9P2Z0 257 aaPredicted RBP10.57□□□□□ -0.72
CUX1-204ENST00000393824 SSR3Q9UNL2 185 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 NUMA1Q14980 2115 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 BTN3A3O00478 584 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 FFAR3O14843 346 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 GPR42O15529 346 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 EPHX1P07099 455 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 PRKAR1AP10644 381 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 ENGP17813 658 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 DGKAP23743 735 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 EVI2BP34910 448 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 HNF1BP35680 557 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 CSNK1DP48730 415 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 HSPA7P48741 367 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 MAN2A2P49641 1150 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 ABATP80404 500 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 SPHARQ15513 63 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 GRK1Q15835 563 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 WSCD2Q2TBF2 565 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 ZNF628Q5EBL2 1059 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 ARMC12Q5T9G4 340 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 PLEKHM3Q6ZWE6 761 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 SLC44A2Q8IWA5 706 aaPredicted RBP10.57□□□□□ -0.72
CUX1-204ENST00000393824 OR8H3Q8N146 312 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 C19orf18Q8NEA5 215 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 OR4C15Q8NGM1 316 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 AKAP1Q92667 903 aaKnown RBP eCLIP10.57□□□□□ -0.721e-6■■■■□ 21.5
CUX1-204ENST00000393824 UPRTQ96BW1 309 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 MSANTD3Q96H12 275 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 SYNDIG1Q9H7V2 258 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 EVA1BQ9NVM1 165 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 RLIMQ9NVW2 624 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 C2orf42Q9NWW7 574 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 NDRG2Q9UN36 371 aaKnown RBP10.57□□□□□ -0.72
CUX1-204ENST00000393824 ZNF451Q9Y4E5 1061 aa10.57□□□□□ -0.72
CUX1-204ENST00000393824 FAM240BA0A1B0GVZ2 78 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 TMEM229AB2RXF0 380 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 LOC730098B7Z3J9 87 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SPINT1O43278 529 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SUV39H1O43463 412 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CCNB2O95067 398 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CDRT1O95170 752 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CLDN7O95471 211 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 POP4O95707 220 aaKnown RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 B3GALT4O96024 378 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 TRBC1P01850 177 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 RAF1P04049 648 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SRPRAP08240 638 aaKnown RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 HOXD4P09016 255 aaPredicted RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 SOX3P41225 446 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CRYBA2P53672 197 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CDC42P60953 191 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 ZNF267Q14586 743 aaPredicted RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 AANATQ16613 207 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 MICAQ29983 383 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CLLU1Q5K131 121 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 GPAT4Q86UL3 456 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CDH24Q86UP0 819 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SYNPOQ8N3V7 929 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms