RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 DUSP26Q9BV47 211 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SPRTNQ9H040 489 aaPredicted RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 MAGIXQ9H6Y5 334 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 DMRT3Q9NQL9 472 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 CUTCQ9NTM9 273 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 OLAHQ9NV23 265 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SIRT5Q9NXA8 310 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 MYRFQ9Y2G1 1151 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 PTPRBP23467 1997 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 LOC105369274A0A096LPK9 316 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 LOC102723532A0A0G2JNH3 316 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 SMIM31A0A1B0GVY4 71 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 A0A1B0GX78 115 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 GABRR3A8MPY1 467 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 H3BNH8 94 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 CLIC1O00299 241 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 SERPINA1P01009 418 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 ALBP02768 609 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 TFAP2AP05549 437 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 GNAO1P09471 354 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 RAB40ALP0C0E4 278 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 ATP6V1B1P15313 513 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 HOXB6P17509 224 aaKnown RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 IL1RNP18510 177 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 ZNF10P21506 573 aaPredicted RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 TSFMP43897 325 aaKnown RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 DCDP81605 110 aaKnown RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 MEF2AQ02078 507 aaPredicted RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 RBBP5Q15291 538 aaKnown RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 DEFB110Q30KQ9 67 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 ZNF621Q6ZSS3 439 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 FKBP9P1Q75LS8 142 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 ZNF551Q7Z340 670 aaPredicted RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 VN1R4Q7Z5H5 301 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 CAMKMTQ7Z624 323 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 CLECL1Q8IZS7 167 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 OR4N4Q8N0Y3 316 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 ARHGEF39Q8N4T4 335 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 VPS37AQ8NEZ2 397 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 CYGBQ8WWM9 190 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 TMBIM1Q969X1 311 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 NACC2Q96BF6 587 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 CLIP3Q96DZ5 547 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 RMND5BQ96G75 393 aaPredicted RBP9.61□□□□□ -0.87
VPS53-202ENST00000389040 TSC22D3Q99576 134 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 ROGDIQ9GZN7 287 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 LHX9Q9NQ69 397 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 NDUFA13Q9P0J0 144 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 FOXJ2Q9P0K8 574 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 DNAJB9Q9UBS3 223 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 BTNL2Q9UIR0 455 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 KCND3Q9UK17 655 aa9.61□□□□□ -0.87
VPS53-202ENST00000389040 FEZF1A0PJY2 475 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 PMS2P1A4D2B8 440 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 LRIT2A6NDA9 550 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 NDUFS4O43181 175 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 HCRTR1O43613 425 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 CPSF4O95639 269 aaKnown RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 EIF2S1P05198 315 aaKnown RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 CYC1P08574 325 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 PTX3P26022 381 aaPredicted RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 CAPGP40121 348 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 AVPR1BP47901 424 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ALDH3A2P51648 485 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 FOXK1P85037 733 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ZNF763Q0D2J5 394 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ADPRMQ3LIE5 342 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 CYBRD1Q53TN4 286 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ANXA8L1Q5VT79 327 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 TBPL2Q6SJ96 375 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 COMMD6Q7Z4G1 85 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ANKRD53Q8N9V6 530 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 C7orf57Q8NEG2 295 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 TSPAN14Q8NG11 270 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 CREB3L4Q8TEY5 395 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 KIAA1143Q96AT1 154 aaPredicted RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 FKBP10Q96AY3 582 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 COQ8BQ96D53 544 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 SLC6A16Q9GZN6 736 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 SPNS1Q9H2V7 528 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ERVK-11Q9UQG0 969 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 PCDHGA6Q9Y5G7 932 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 PCDH17O14917 1159 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 RAD1O60671 282 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 TIAF1O95411 115 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 NSA2O95478 260 aaKnown RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 SNAP29O95721 258 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 HPRP00739 348 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 CST1P01037 141 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 C1QCP02747 245 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 GPX2P18283 190 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 STAT5AP42229 794 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 UCNP55089 124 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 LRRC74AQ0VAA2 488 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 DAG1Q14118 895 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ADRM1Q16186 407 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 CNPY1Q3B7I2 92 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 CRTC2Q53ET0 693 aaPredicted RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 OTUD3Q5T2D3 398 aaPredicted RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 ZNF385CQ66K41 422 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms