RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 UBE2FQ969M7 185 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 SIPA1Q96FS4 1042 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 DHRS1Q96LJ7 313 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 BBS4Q96RK4 519 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 COPS4Q9BT78 406 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 FGF22Q9HCT0 170 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 PRDM7Q9NQW5 492 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 FKBP14Q9NWM8 211 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 TMCC3Q9ULS5 477 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 ASB4Q9Y574 426 aa20.35■□□□□ 0.85
TRIM54-202ENST00000380075 USP34Q70CQ2 3546 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 CLCA1A8K7I4 914 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 ERI3O43414 337 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 FADS2O95864 444 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 VIPP01282 170 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 TDGF1P13385 188 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 ATP5A1P25705 553 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 PSMB9P28065 219 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 MAT2AP31153 395 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 STXBP1P61764 594 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 TGM3Q08188 693 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 SLAMF1Q13291 335 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 SPCS2Q15005 226 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 MAPK11Q15759 364 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 TBCEQ15813 527 aaPredicted RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 ZNF425Q6IV72 752 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 GPR32P1Q8NGA4 272 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 RAB8BQ92930 207 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 SPATA5L1Q9BVQ7 753 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 TPSD1Q9BZJ3 242 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 IMPAD1Q9NX62 359 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 ETAA1Q9NY74 926 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 PCDHGA4Q9Y5G9 962 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 OR2A25A4D2G3 310 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 SLC31A1O15431 190 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 SLC28A2O43868 658 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 GABRB1P18505 474 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 PEBP1P30086 187 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 NCBP2P52298 156 aaKnown RBP eCLIP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 CDC42P60953 191 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 GANABQ14697 944 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 ANGPT1Q15389 498 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 KIAA1324Q6UXG2 1013 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 ACOT4Q8N9L9 421 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 AQP11Q8NBQ7 271 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 OR51I1Q9H343 314 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 KLHL31Q9H511 634 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 FZD3Q9NPG1 666 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 CD93Q9NPY3 652 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 ZCCHC3Q9NUD5 404 aaKnown RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 SEC14L3Q9UDX4 400 aa20.34■□□□□ 0.85
TRIM54-202ENST00000380075 GPC6Q9Y625 555 aaPredicted RBP20.34■□□□□ 0.85
TRIM54-202ENST00000380075 A0A0G2JN53 185 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 A0A0J9YVX5 310 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 FAAHO00519 579 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 IDH2P48735 452 aaKnown RBP20.33■□□□□ 0.84
TRIM54-202ENST00000380075 RAB15P59190 212 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 NFATC4Q14934 902 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 TOR1AIP1Q5JTV8 583 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 ZNF770Q6IQ21 691 aaPredicted RBP20.33■□□□□ 0.84
TRIM54-202ENST00000380075 Q6ZPB1 254 aaPredicted RBP20.33■□□□□ 0.84
TRIM54-202ENST00000380075 SLC44A2Q8IWA5 706 aaPredicted RBP20.33■□□□□ 0.84
TRIM54-202ENST00000380075 BBS10Q8TAM1 723 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 FNDC8Q8TC99 324 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 SERHL2Q9H4I8 314 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 NMNAT1Q9HAN9 279 aaPredicted RBP20.33■□□□□ 0.84
TRIM54-202ENST00000380075 BCL2L10Q9HD36 194 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 MGAT4BQ9UQ53 548 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 ENTPD4Q9Y227 616 aa20.33■□□□□ 0.84
TRIM54-202ENST00000380075 SH3D21A4FU49 640 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 ANKRD33BA6NCL7 494 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 CLDN24A6NM45 220 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PPM1DO15297 605 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 GALR2O43603 387 aaPredicted RBP20.32■□□□□ 0.84
TRIM54-202ENST00000380075 CDK1P06493 297 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 HOXA6P31267 233 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 LIM2P55344 173 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PPP2CBP62714 309 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PPP2CAP67775 309 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 KLHL35Q6PF15 583 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 AMIGO1Q86WK6 493 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 TMEM145Q8NBT3 493 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 OR56A1Q8NGH5 318 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 UTP15Q8TED0 518 aaKnown RBP20.32■□□□□ 0.84
TRIM54-202ENST00000380075 TRUB1Q8WWH5 349 aaKnown RBP20.32■□□□□ 0.84
TRIM54-202ENST00000380075 SLC22A18Q96BI1 424 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 TREX2Q9BQ50 279 aaPredicted RBP20.32■□□□□ 0.84
TRIM54-202ENST00000380075 RHNO1Q9BSD3 238 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 LYARQ9NX58 379 aaKnown RBP20.32■□□□□ 0.84
TRIM54-202ENST00000380075 ZNF226Q9NYT6 803 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 SCHIP1Q9P0W5 487 aaPredicted RBP20.32■□□□□ 0.84
TRIM54-202ENST00000380075 FBXO4Q9UKT5 387 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 ACAD8Q9UKU7 415 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PCOLCE2Q9UKZ9 415 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PNMA8BQ9ULN7 279 aaPredicted RBP20.32■□□□□ 0.84
TRIM54-202ENST00000380075 SNX11Q9Y5W9 270 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 DMDP11532 3685 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 ZAR1LA6NP61 321 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 FFAR1O14842 300 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 OR12D1P0DN82 309 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms