RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FBXO8Q9NRD0 319 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 FBXL12Q9NXK8 326 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 TAS2R7Q9NYW3 318 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 MOSPD1Q9UJG1 213 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 GPSM3Q9Y4H4 160 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 C5orf58C9J3I9 102 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SLC28A2O43868 658 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF24P17028 368 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 CSNK2BP67870 215 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SLAMF1Q13291 335 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 PERM1Q5SV97 790 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 OR2L8Q8NGY9 312 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 OR14C36Q8NHC7 312 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 ZBED6CLQ96FA7 236 aaPredicted RBP12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SLC6A18Q96N87 628 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 CENPOQ9BU64 300 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SLC17A9Q9BYT1 436 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 PALMDQ9NP74 551 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SLC35C2Q9NQQ7 365 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 MAN2C1Q9NTJ4 1040 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 APOBEC3BQ9UH17 382 aaKnown RBP12.64□□□□□ -0.39
CCDC3-202ENST00000378839 ADAM29Q9UKF5 820 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 B3GNT3Q9Y2A9 372 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 A6NL46 340 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 AGRPO00253 132 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ADAM23O75077 832 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ENTPD6O75354 484 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 GSTT2P0CG29 244 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 GSTT2BP0CG30 244 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 NCBP2P52298 156 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 RPE65Q16518 533 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM196Q5HYL7 178 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 PGBD2Q6P3X8 592 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 OR2L3Q8NG85 312 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ZG16BQ96DA0 208 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF354BQ96LW1 612 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 DCSTAMPQ9H295 470 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 C6orf106Q9H6K1 298 aaPredicted RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF556Q9HAH1 456 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ACSS1Q9NUB1 689 aaPredicted RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ACAD8Q9UKU7 415 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 GPC6Q9Y625 555 aaPredicted RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 PRUNE2Q8WUY3 3088 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 FUOMA2VDF0 154 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ARRDC5A6NEK1 342 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 POM121BA6NF01 834 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM221A6NGB7 291 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 H0Y8X5 98 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ERI3O43414 337 aaKnown RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ADH1BP00325 375 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 APODP05090 189 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 CERS1P27544 350 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 SLC15A1P46059 708 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 PRKAG1P54619 331 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 CLDN2P57739 230 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 RAB8AP61006 207 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF846Q147U1 533 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 SHHQ15465 462 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 INAQ16352 499 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 MRM1Q6IN84 353 aaKnown RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ABHD17CQ6PCB6 329 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 CCDC116Q8IYX3 515 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 ACOT4Q8N9L9 421 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM145Q8NBT3 493 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 MYDGFQ969H8 173 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM74BQ9NUR3 256 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 CES1P1Q9UKY3 287 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 WBP11Q9Y2W2 641 aaKnown RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 GOLGA4Q13439 2230 aaKnown RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 SLC31A1O15431 190 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 AIREO43918 545 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 RNGTTO60942 597 aaKnown RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 DNAJB6O75190 326 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 RCVRNP35243 200 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TFF2Q03403 129 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 MLC1Q15049 377 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 DGUOKQ16854 277 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 SLC30A8Q8IWU4 369 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D19Q8N5T2 526 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 IQCF1Q8N6M8 205 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 SIMC1Q8NDZ2 872 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 CCL4L1Q8NHW4 92 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TIMM29Q9BSF4 260 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 SLC25A19Q9HC21 320 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 MRPS30Q9NP92 439 aaKnown RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 CTPS2Q9NRF8 586 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 PHPT1Q9NRX4 125 aaPredicted RBP12.63□□□□□ -0.39
CCDC3-202ENST00000378839 TBCCD1Q9NVR7 557 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 IMPAD1Q9NX62 359 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 QPCTLQ9NXS2 382 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 FBXW2Q9UKT8 454 aa12.63□□□□□ -0.39
CCDC3-202ENST00000378839 MDC1Q14676 2089 aaKnown RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 PLRG1O43660 514 aaKnown RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ERAL1O75616 437 aaKnown RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 AIFM1O95831 613 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ATP5A1P25705 553 aaKnown RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 MAN2A2P49641 1150 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ADPRHP54922 357 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ARMCX4Q5H9R4 360 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF362Q5T0B9 420 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms