RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RFPL2O75678 378 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 RPS21P63220 83 aaKnown RBP13.11□□□□□ -0.31
COL4A1-201ENST00000375820 TSNAXQ99598 290 aaKnown RBP13.11□□□□□ -0.31
COL4A1-201ENST00000375820 GPR83Q9NYM4 423 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 COPZ2Q9P299 210 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 COQ4Q9Y3A0 265 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 GOSR2O14653 212 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SLC16A5O15375 505 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 OR2B3O76000 313 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 BMP1P13497 986 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SHC2P98077 582 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 KANSL1Q7Z3B3 1105 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 TRIM46Q7Z4K8 759 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 GID4Q8IVV7 300 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 C15orf40Q8WUR7 153 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 G6PC3Q9BUM1 346 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 ERVK-19Q9WJR5 959 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 HRGP04196 525 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 H2AFB2P0C5Z0 115 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 IRF2P14316 349 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 CD1DP15813 335 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 IL1RNP18510 177 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 HSD11B2P80365 405 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 NKPD1Q17RQ9 610 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 EEF1A1P5Q5VTE0 462 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 AWAT2Q6E213 333 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 CSNK1A1LQ8N752 337 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 SPHK2Q9NRA0 654 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PAK1IP1Q9NWT1 392 aaPredicted RBP13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PCDHGA8Q9Y5G5 932 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 C1GALT1C1LP0DN25 315 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PSD4Q8NDX1 1056 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 DIO2Q92813 273 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 ARL6Q9H0F7 186 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PCDHGB6Q9Y5F9 930 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 IGKV6D-41A0A0C4DH26 115 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 SFTPDP35247 375 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 KCNC1P48547 511 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 BATFQ16520 125 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 CATSPEREQ5SY80 951 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 NIPAL1Q6NVV3 410 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PLBD1Q6P4A8 553 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 ZSCAN1Q8NBB4 408 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 CCNL2Q96S94 520 aaPredicted RBP13.1□□□□□ -0.31
COL4A1-201ENST00000375820 MARCH4Q9P2E8 410 aaPredicted RBP13.1□□□□□ -0.31
COL4A1-201ENST00000375820 H7C2Y5 167 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 FBXO45P0C2W1 286 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 S100PP25815 95 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 RSU1Q15404 277 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 ZNF461Q8TAF7 563 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 BBS10Q8TAM1 723 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 GLYATL1Q969I3 302 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 BORCS7-ASMTA0A0B4J1R7 106 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PEX14O75381 377 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 KNG1P01042 644 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 APOC3P02656 99 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 DCKP27707 260 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 DLX2Q07687 328 aaPredicted RBP13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PON2Q15165 354 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PPA1Q15181 289 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 APCDD1Q8J025 514 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PLEKHO2Q8TD55 490 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 TMEM234Q8WY98 164 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 LRR1Q96L50 414 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 MRGPRX2Q96LB1 330 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 FOXN4Q96NZ1 517 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 DOHHQ9BU89 302 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 PLEKHA3Q9HB20 300 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 EBF1Q9UH73 591 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 SIX4Q9UIU6 781 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 ZNF175Q9Y473 711 aa13.1□□□□□ -0.31
COL4A1-201ENST00000375820 RGS9O75916 674 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-201ENST00000375820 GKN3PP0CG01 181 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 ETFAP13804 333 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 LRIF1Q5T3J3 769 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 METTL2AQ96IZ6 378 aaKnown RBP13.09□□□□□ -0.31
COL4A1-201ENST00000375820 MAELQ96JY0 434 aaKnown RBP13.09□□□□□ -0.31
COL4A1-201ENST00000375820 TMEM184CQ9NVA4 438 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 KLHL9Q9P2J3 617 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 ADAMTS6Q9UKP5 1117 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 OARD1Q9Y530 152 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 LRRC25Q8N386 305 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-201ENST00000375820 SDSLQ96GA7 329 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 DNAJC5Q9H3Z4 198 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 FAM124BQ9H5Z6 455 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-201ENST00000375820 CWH43Q9H720 699 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 PTBP2Q9UKA9 531 aaKnown RBP13.09□□□□□ -0.31
COL4A1-201ENST00000375820 TP53I11O14683 189 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 DRD5P21918 477 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 DPP6P42658 865 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 JAG1P78504 1218 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 GPR17Q13304 367 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 TUBA3CQ13748 450 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 MOGQ16653 247 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 ZNF791Q3KP31 576 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-201ENST00000375820 HACD2Q6Y1H2 254 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 BEST3Q8N1M1 668 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 KATNBL1Q9H079 304 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 ROBO1Q9Y6N7 1651 aa13.09□□□□□ -0.31
COL4A1-201ENST00000375820 MPPED1O15442 326 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms