RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 WSCD2Q2TBF2 565 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 MPPE1Q53F39 396 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 KIAA1841Q6NSI8 718 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 METAP1DQ6UB28 335 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-202ENST00000375299 DNAJB7Q7Z6W7 309 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-202ENST00000375299 ABI3BPQ7Z7G0 1075 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 ZNF557Q8N988 423 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-202ENST00000375299 ZNF480Q8WV37 535 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 UFD1Q92890 307 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 UPRTQ96BW1 309 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 TMEM169Q96HH4 297 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 ZNF354BQ96LW1 612 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 FOPNLQ96NB1 174 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 TRIM45Q9H8W5 580 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-202ENST00000375299 ISYNA1Q9NPH2 558 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 NLKQ9UBE8 527 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 MALT1Q9UDY8 824 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 ACAD8Q9UKU7 415 aa20.04■□□□□ 0.8
UPF3A-202ENST00000375299 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-202ENST00000375299 TMEM129A0AVI4 362 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 PITPNM1O00562 1244 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 NME6O75414 186 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-202ENST00000375299 ABLIM3O94929 683 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 C1GALT1C1LP0DN25 315 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 SMIM11AP58511 58 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 SNRPD2P62316 118 aaKnown RBP20.03■□□□□ 0.8
UPF3A-202ENST00000375299 TSTA3Q13630 321 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-202ENST00000375299 GINS1Q14691 196 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 CREB3L2Q70SY1 520 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 IKBIPQ70UQ0 350 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 TMEM145Q8NBT3 493 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 TIFAQ96CG3 184 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 NEURL3Q96EH8 262 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 NECTIN4Q96NY8 510 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 TM9SF2Q99805 663 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 MVB12BQ9H7P6 319 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 B3GAT2Q9NPZ5 323 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 DIABLOQ9NR28 239 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 TMEM39AQ9NV64 488 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 POP4O95707 220 aaKnown RBP20.03■□□□□ 0.8
UPF3A-202ENST00000375299 OLFM2O95897 454 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 NPPBP16860 134 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 KCNJ5P48544 419 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 RRAS2P62070 204 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-202ENST00000375299 FABP5Q01469 135 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 P2RY14Q15391 338 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 HIST2H2AA3Q6FI13 130 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 FAM180BQ6P0A1 224 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 CCDC28AQ8IWP9 274 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 GATAD2BQ8WXI9 593 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 FGF11Q92914 225 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 HS3ST2Q9Y278 367 aa20.03■□□□□ 0.8
UPF3A-202ENST00000375299 CACNB4O00305 520 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-202ENST00000375299 CASKO14936 926 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 HPGDSO60760 199 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 SLC43A1O75387 559 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 ZNF30P17039 623 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 FGF9P31371 208 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-202ENST00000375299 GABRA5P31644 462 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 DCDC1P59894 354 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 MPP7Q5T2T1 576 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 LHX8Q68G74 356 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 LAMTOR1Q6IAA8 161 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 Q6ZVL8 140 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 TMC8Q8IU68 726 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 TRAM1L1Q8N609 369 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 WFDC6Q9BQY6 131 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 MARVELD1Q9BSK0 173 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 TMEM43Q9BTV4 400 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 SPNS1Q9H2V7 528 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 ZNF334Q9HCZ1 680 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-202ENST00000375299 FGF20Q9NP95 211 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-202ENST00000375299 ANKDD1BA6NHY2 528 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 ATG13O75143 517 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 MAPK9P45984 424 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 MEF2AQ02078 507 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-202ENST00000375299 SP3Q02447 781 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 MAB21L1Q13394 359 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 IL18Q14116 193 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 ACSM5Q6NUN0 579 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 CPXM2Q8N436 756 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 RASGEF1AQ8N9B8 481 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 PLA2G15Q8NCC3 412 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 CHST14Q8NCH0 376 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 MRPS18AQ9NVS2 196 aaKnown RBP20.02■□□□□ 0.8
UPF3A-202ENST00000375299 MCUBQ9NWR8 336 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 SRRDQ9UH36 339 aa20.02■□□□□ 0.8
UPF3A-202ENST00000375299 PLXND1Q9Y4D7 1925 aa20.02■□□□□ 0.79
UPF3A-202ENST00000375299 IRGMA1A4Y4 181 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 ORC5O43913 435 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 APOL3O95236 402 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 ACP2P11117 423 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 ARSBP15848 533 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 PTBP1P26599 531 aaKnown RBP eCLIP20.01■□□□□ 0.79
UPF3A-202ENST00000375299 PDHA2P29803 388 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 ABATP80404 500 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 RAB40BQ12829 278 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 COX10Q12887 443 aa20.01■□□□□ 0.79
UPF3A-202ENST00000375299 SF3A2Q15428 464 aaKnown RBP20.01■□□□□ 0.79
UPF3A-202ENST00000375299 DUSP6Q16828 381 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms