RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CPTPQ5TA50 214 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 DHRS13Q6UX07 377 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 PRSS48Q7RTY5 328 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF551Q7Z340 670 aaPredicted RBP13.52□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF438Q7Z4V0 828 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 MARCH9Q86YJ5 346 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 HIPK1Q86Z02 1210 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 SPARTQ8N0X7 666 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF555Q8NEP9 628 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 OR52E1Q8NGJ3 308 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 CDC6Q99741 560 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 EFCAB11Q9BUY7 163 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 TP63Q9H3D4 680 aaPredicted RBP13.52□□□□□ -0.25
HMGA1-203ENST00000374116 TOR3AQ9H497 397 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 NECTIN3Q9NQS3 549 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 SIRT5Q9NXA8 310 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 RPS6KA6Q9UK32 745 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 UTS2RQ9UKP6 389 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 CORO2BQ9UQ03 480 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 SH2B3Q9UQQ2 575 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 PCDHB11Q9Y5F2 797 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 A0A1W2PQM1 296 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 GUCY1B2O75343 617 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 CPSF4O95639 269 aaKnown RBP13.51□□□□□ -0.25
HMGA1-203ENST00000374116 RPLP0P05388 317 aaKnown RBP13.51□□□□□ -0.25
HMGA1-203ENST00000374116 FTH1P19P0C7X4 201 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 LAMP1P11279 417 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 BMP4P12644 408 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 TIA1P31483 386 aaKnown RBP eCLIP13.51□□□□□ -0.257e-6■■■□□ 17.4
HMGA1-203ENST00000374116 DCTP40126 519 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 IST1P53990 364 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 TOP3AQ13472 1001 aaPredicted RBP13.51□□□□□ -0.25
HMGA1-203ENST00000374116 HIST2H2ACQ16777 129 aaPredicted RBP13.51□□□□□ -0.25
HMGA1-203ENST00000374116 HIST2H2AA3Q6FI13 130 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 ADNP2Q6IQ32 1131 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 TUBA3EQ6PEY2 450 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 GPR155Q7Z3F1 870 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 TMPRSS9Q7Z410 1059 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 THAP5Q7Z6K1 395 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 TMPRSS11BQ86T26 416 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 LAS2Q8IYD9 372 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 ZZZ3Q8IYH5 903 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 C8orf59Q8N0T1 100 aaPredicted RBP13.51□□□□□ -0.25
HMGA1-203ENST00000374116 OR5K2Q8NHB8 316 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 CDC26Q8NHZ8 85 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 ZFP90Q8TF47 636 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 RASSF5Q8WWW0 418 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 RSC1A1Q92681 617 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 COQ8BQ96D53 544 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 SNX18Q96RF0 628 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 SMURF2Q9HAU4 748 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 POT1Q9NUX5 634 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 FAM118AQ9NWS6 357 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 NPAP1Q9NZP6 1156 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 PCM1Q15154 2024 aa13.51□□□□□ -0.25
HMGA1-203ENST00000374116 GABRR3A8MPY1 467 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ASNA1O43681 348 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 C1GALT1C1LP0DN25 315 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 CEACAM1P13688 526 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 CSRP1P21291 193 aaKnown RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 CXCR2P25025 360 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 RPS13P62277 151 aaKnown RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 CFHR1Q03591 330 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 LAPTM5Q13571 262 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 DGUOKQ16854 277 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 RFX4Q33E94 735 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 SIGIRRQ6IA17 410 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 SPESP1Q6UW49 350 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ZBTB46Q86UZ6 589 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 SLC22A16Q86VW1 577 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ZDHHC21Q8IVQ6 265 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 OR10G6Q8NH81 332 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ANGPTL6Q8NI99 470 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ING2Q9H160 280 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ABCG4Q9H172 646 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 TRIT1Q9H3H1 467 aaKnown RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 KIR3DX1Q9H7L2 352 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 PRM3Q9NNZ6 103 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 C3orf18Q9UK00 162 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 AP1M2Q9Y6Q5 423 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 COLEC10Q9Y6Z7 277 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 IGHV1OR21-1A0A087WYE8 117 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 SAGE2PA6NJ88 616 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 IDH3BO43837 385 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 PCDH7O60245 1069 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF682O95780 498 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ENDOUP21128 410 aaKnown RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 DUSP3P51452 185 aaPredicted RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 PPP5CP53041 499 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 VEZF1Q14119 521 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 ZC3H12BQ5HYM0 836 aaKnown RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 CATSPEREQ5SY80 951 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 SHQ1Q6PI26 577 aaKnown RBP13.5□□□□□ -0.25
HMGA1-203ENST00000374116 CLECL1Q8IZS7 167 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 CAPSLQ8WWF8 208 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 SH3KBP1Q96B97 665 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 MBOAT4Q96T53 435 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 NUDT22Q9BRQ3 303 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 MENTQ9BUN1 341 aa13.5□□□□□ -0.25
HMGA1-203ENST00000374116 TPT1P8Q9HAU6 139 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms